Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.3e-126 456.4 231 100.0
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.0e-96 357.1 333 61.6
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 3.8e-91 338.6 331 61.0
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 1.8e-88 329.7 331 58.3
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 8.8e-88 327.4 333 57.7
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 7.5e-87 324.3 333 58.0
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.8e-86 322.4 331 58.3
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 4.8e-86 321.6 333 57.4
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 6.3e-86 321.2 305 62.0
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 9.5e-82 307.4 303 57.8
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.6e-81 306.6 333 52.3
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 6.1e-81 304.7 332 52.7
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 8.0e-81 304.3 333 52.6
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 6.8e-80 301.2 333 52.0
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 3.7e-78 295.4 305 55.4
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.7e-78 295.4 333 51.4
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.4e-77 293.5 333 51.7
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.8e-77 293.1 333 52.3
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 5.4e-77 291.6 333 51.7
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 5.4e-77 291.6 336 50.9
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 4.5e-76 288.5 336 50.3
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.8e-76 287.7 334 50.6
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.7e-75 286.6 329 50.2
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.3e-75 286.2 335 50.1
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.1e-74 283.9 333 49.8
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.9e-74 283.1 338 50.3
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.9e-74 283.1 333 49.5
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 4.3e-74 282.0 341 49.6
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 5.6e-74 281.6 335 49.9
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 7.3e-74 281.2 326 51.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 9.5e-74 280.8 338 49.7
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 9.5e-74 280.8 338 49.7
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 2.1e-73 279.6 335 49.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 4.7e-73 278.5 330 50.3
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 6.1e-73 278.1 340 48.8
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 8.0e-73 277.7 334 50.0
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.0e-72 277.3 333 48.9
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.0e-72 277.3 333 48.9
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.4e-72 276.9 336 48.8
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 5.2e-72 275.0 336 49.1
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 5.2e-72 275.0 334 47.9
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 8.9e-72 274.2 335 48.4
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.5e-71 273.5 339 48.4
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.5e-71 273.5 310 50.6
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.5e-71 273.5 336 48.8
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.6e-71 272.7 333 47.7
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.4e-71 272.3 335 49.6
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 4.4e-71 271.9 333 50.2
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 7.5e-71 271.2 335 48.4
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 9.8e-71 270.8 339 47.8
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 9.8e-71 270.8 333 48.0
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.3e-70 270.4 333 48.0
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 1.3e-70 270.4 337 48.7
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 1.3e-70 270.4 330 49.1
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.7e-70 270.0 330 49.7
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.2e-70 269.6 334 47.3
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 2.2e-70 269.6 335 48.4
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 2.2e-70 269.6 335 48.7
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 2.9e-70 269.2 340 47.4
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 3.7e-70 268.9 331 48.6
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 3.7e-70 268.9 335 48.7
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 3.7e-70 268.9 333 48.6
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 3.7e-70 268.9 335 48.4
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 3.7e-70 268.9 376 44.9
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 6.4e-70 268.1 326 47.2
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 8.3e-70 267.7 332 46.1
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 8.3e-70 267.7 333 46.8
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.1e-69 267.3 333 47.4
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.4e-69 266.9 333 46.5
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.4e-69 266.9 335 49.3
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.9e-69 266.5 336 48.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.9e-69 266.5 341 46.3
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 2.4e-69 266.2 333 45.9
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 2.4e-69 266.2 332 46.7
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 2.4e-69 266.2 332 46.7
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 2.4e-69 266.2 336 49.1
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.2e-69 265.8 334 47.9
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.4e-69 265.0 333 46.8
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.2e-68 263.8 341 45.7
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 2.0e-68 263.1 333 46.8
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.7e-68 262.7 333 47.1
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 4.6e-68 261.9 336 48.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 6.0e-68 261.5 333 48.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 7.8e-68 261.2 329 46.8
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.7e-67 260.0 335 47.5
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 3.0e-67 259.2 341 46.0
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 3.9e-67 258.8 400 42.8
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 3.9e-67 258.8 335 46.9
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 8.6e-67 257.7 336 47.0
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-66 256.9 338 47.0
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.9e-66 256.5 333 46.8
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 2.5e-66 256.1 327 47.7
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 2.5e-66 256.1 315 46.0
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.3e-66 255.8 343 45.5
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.6e-65 253.4 330 46.4
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 1.6e-65 253.4 340 46.5
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.1e-65 253.1 316 45.6
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.7e-65 251.9 343 44.9
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 6.2e-65 251.5 343 44.9
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 6.2e-65 251.5 338 46.2
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 8.0e-65 251.1 366 43.7
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 1.1e-64 250.8 316 45.3
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.4e-64 250.4 295 48.5
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 2.3e-64 249.6 316 45.3
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 8.9e-64 247.7 334 45.5
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.2e-63 247.3 363 43.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.2e-63 247.3 368 42.7
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 2.6e-63 246.1 314 44.9
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 4.4e-63 245.4 332 46.4
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.3e-59 233.8 154 75.3
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 2.3e-59 233.0 320 45.6
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 8.6e-59 231.1 154 74.7
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 4.3e-58 228.8 316 45.3
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 3.6e-57 225.7 373 42.4
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 4.7e-57 225.3 157 72.0
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.4e-56 223.8 154 72.7
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.6e-55 219.5 288 44.8
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.7e-54 215.7 327 42.2
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 7.1e-53 211.5 349 39.8
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 6.6e-51 204.9 316 39.9
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 4.0e-48 195.7 348 37.4
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 5.2e-48 195.3 154 64.3
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 8.9e-48 194.5 259 45.9
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 8.9e-48 194.5 296 41.2
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.2e-46 189.9 270 44.4
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 8.4e-46 188.0 340 38.8
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 2.7e-44 183.0 271 45.0
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 7.3e-42 174.9 246 45.5
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 4.4e-39 165.6 162 53.7
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 9.3e-37 157.9 106 71.7
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 4.9e-30 135.6 217 37.3
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 1.4e-29 134.0 71 98.6
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 9.0e-24 114.8 210 41.9
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 3.8e-22 109.4 70 87.1
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 5.1e-19 99.0 70 71.4
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.3e-18 96.3 92 53.3
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.7e-17 92.8 59 86.4
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 1.1e-16 91.3 59 69.5
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 2.6e-15 86.7 71 64.8
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 3.4e-15 86.3 72 65.3
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 4.5e-15 85.9 70 68.6
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 2.2e-14 83.6 52 71.2
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.2e-14 83.6 74 63.5
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 4.9e-14 82.4 72 63.9
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 2.5e-13 80.1 72 62.5
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.5e-13 80.1 79 63.3
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 7.1e-13 78.6 73 56.2
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.6e-12 77.4 80 48.8
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 7.4e-10 68.6 73 54.8
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 1.8e-08 63.9 182 31.3
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 2.4e-08 63.5 59 54.2
unitig_736.g22563 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-07 61.2 51 58.8
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 5.9e-07 58.9 170 31.8
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 7.7e-07 58.5 75 45.3
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.0e-06 58.2 34 76.5
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 2.2e-06 57.0 39 61.5
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.9e-06 56.6 41 61.0
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 6.5e-06 55.5 40 75.0


User provided reference genes

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