Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-183 646.7 446 100.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.4e-150 536.2 459 82.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 5.8e-136 488.4 456 77.9
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.3e-132 477.2 452 74.8
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 5.1e-124 448.7 449 71.9
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.9e-119 432.2 449 71.0
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.7e-101 373.2 432 65.3
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.9e-94 350.5 449 55.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 7.1e-94 348.6 264 70.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.1e-93 347.1 429 53.1
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.9e-93 345.1 265 67.9
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.8e-92 344.0 432 56.2
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.3e-92 343.6 265 67.9
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.0e-92 343.2 432 57.6
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.9e-92 342.8 264 70.5
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.1e-92 342.4 256 69.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 6.7e-92 342.0 264 68.2
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.7e-92 341.7 256 69.5
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 8.7e-92 341.7 387 56.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.5e-91 340.9 262 68.7
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 4.3e-91 339.3 390 56.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.7e-91 338.2 256 69.5
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-90 337.8 452 52.4
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.3e-90 337.8 255 70.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.3e-90 337.8 263 66.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.6e-90 337.4 460 51.7
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.6e-90 337.4 238 73.5
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.6e-90 337.4 263 66.5
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.8e-90 336.7 251 69.7
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.7e-90 336.3 390 54.1
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.7e-90 336.3 254 69.3
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 4.8e-90 335.9 254 69.3
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.8e-90 335.9 263 66.9
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.1e-89 333.2 240 70.0
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.1e-89 333.2 273 65.6
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 6.9e-89 332.0 249 67.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.2e-88 331.3 362 58.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-88 330.9 263 64.3
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.5e-88 330.9 263 64.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 2.0e-88 330.5 239 71.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.0e-88 330.5 259 67.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.0e-88 330.5 242 71.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.6e-88 330.1 401 56.6
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.4e-88 329.7 450 54.4
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.4e-88 329.7 264 65.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 3.4e-88 329.7 260 65.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 3.4e-88 329.7 264 68.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.4e-88 329.7 261 67.0
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 5.9e-88 328.9 248 67.3
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 5.9e-88 328.9 271 64.9
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 7.7e-88 328.6 248 66.9
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.7e-88 328.6 453 51.9
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-87 327.8 407 53.6
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.3e-87 327.8 260 63.8
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.3e-87 327.8 248 66.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.3e-87 327.8 252 67.5
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.2e-87 327.0 244 73.0
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.9e-87 326.6 255 65.1
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.9e-87 326.6 248 66.5
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.9e-87 326.6 267 65.2
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 5.0e-87 325.9 257 66.9
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 5.0e-87 325.9 245 71.4
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 6.5e-87 325.5 264 65.9
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 8.5e-87 325.1 259 63.7
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.1e-86 324.7 242 69.0
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-86 324.7 246 68.3
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.9e-86 323.9 249 65.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.5e-86 322.4 425 51.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 5.5e-86 322.4 385 52.7
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 7.2e-86 322.0 245 70.6
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 9.4e-86 321.6 279 63.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.2e-85 321.2 391 58.1
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-85 321.2 257 63.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.6e-85 320.9 267 68.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.6e-85 320.9 252 65.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.1e-85 320.5 262 65.3
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.7e-85 320.1 244 69.3
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 4.6e-85 319.3 266 64.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 7.9e-85 318.5 261 63.2
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.0e-84 318.2 251 66.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.4e-84 317.8 450 45.8
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.3e-84 317.0 240 66.7
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.3e-84 317.0 258 62.8
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 3.0e-84 316.6 258 62.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 3.0e-84 316.6 258 63.6
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 5.1e-84 315.8 258 62.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.1e-84 315.8 260 62.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 6.7e-84 315.5 240 66.2
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.5e-83 314.3 382 53.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.3e-83 313.2 250 63.2
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.3e-83 313.2 250 63.2
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.3e-83 313.2 266 60.5
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.3e-83 313.2 256 62.5
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 4.3e-83 312.8 369 57.2
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 7.4e-83 312.0 262 65.6
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 9.7e-83 311.6 449 51.0
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 6.9e-81 305.4 270 62.2
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.2e-80 304.7 265 62.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.2e-80 304.7 244 66.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.5e-80 304.3 251 63.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.4e-80 303.1 239 64.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.9e-80 302.4 250 63.6
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.9e-80 302.4 250 64.4
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.2e-79 300.4 263 62.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 8.5e-79 298.5 262 61.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.2e-78 296.2 250 63.6
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.8e-76 290.8 230 63.5
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.0e-76 290.0 213 70.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 9.7e-75 285.0 231 63.2
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.3e-74 284.6 242 59.9
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.8e-73 280.8 264 56.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 7.0e-73 278.9 247 61.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 9.1e-73 278.5 233 63.1
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 9.1e-73 278.5 268 57.5
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 2.3e-68 263.8 245 52.7
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.1e-65 253.4 262 56.5
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.2e-64 251.5 267 53.9
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 7.0e-57 225.7 255 48.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 4.9e-50 203.0 267 43.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.2e-48 198.4 369 42.0
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.2e-45 188.3 234 43.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 4.7e-45 186.4 231 44.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.7e-42 177.9 248 41.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.0e-39 168.7 229 39.7
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.6e-35 154.1 247 36.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.4e-35 153.7 112 67.0
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 9.2e-33 145.6 121 60.3
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.0e-32 144.4 226 38.1
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.1e-28 132.1 256 31.6
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.8e-28 131.3 219 34.2
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 3.4e-27 127.1 227 36.6
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 7.5e-27 125.9 87 66.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.1e-25 122.1 215 30.2
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 3.9e-23 113.6 147 41.5
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 6.6e-23 112.8 276 50.0
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.1e-21 107.8 101 53.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 6.2e-21 106.3 222 29.3
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.8e-20 104.8 220 34.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 8.9e-20 102.4 218 28.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 6.0e-16 89.7 126 44.4
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 6.6e-15 86.3 131 41.2
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 2.4e-12 77.8 67 53.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 3.4e-11 73.9 97 43.3
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 9.9e-11 72.4 108 38.0
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.7e-10 71.6 66 53.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 2.2e-10 71.2 233 28.8
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.8e-10 70.5 186 30.6
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 8.4e-10 69.3 55 52.7
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.4e-09 68.6 53 54.7
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 7.1e-09 66.2 61 50.8
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.6e-08 65.1 134 34.3
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 1.5e-06 58.5 54 51.9


User provided reference genes

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