Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.4e-102 374.4 199 100.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.1e-97 358.6 199 96.0
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.4e-81 305.8 199 84.4
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 6.5e-79 297.7 194 81.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 6.5e-79 297.7 194 81.4
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 8.4e-79 297.4 196 81.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.5e-78 295.8 206 78.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.5e-78 294.7 197 79.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.2e-77 293.5 197 79.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 3.5e-77 292.0 194 80.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.5e-77 292.0 198 78.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 6.0e-77 291.2 195 80.0
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 7.9e-77 290.8 188 81.4
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.9e-77 290.8 197 78.2
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.0e-76 290.4 188 80.9
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.8e-76 289.7 191 80.6
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.3e-76 289.3 198 78.3
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-76 288.5 189 80.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.9e-76 288.5 194 79.4
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 5.1e-76 288.1 193 78.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.5e-75 285.8 196 76.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.3e-75 285.0 188 80.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.3e-75 285.0 192 77.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 4.3e-75 285.0 198 76.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 7.4e-75 284.3 192 78.1
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 7.4e-75 284.3 194 78.9
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 9.6e-75 283.9 193 77.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.3e-74 283.5 192 77.1
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.3e-74 283.5 192 77.1
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.6e-74 283.1 187 79.1
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.6e-74 283.1 192 78.1
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.1e-74 282.7 191 77.5
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 194 76.8
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.8e-74 282.3 193 77.7
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.8e-74 282.3 200 77.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 3.7e-74 282.0 194 76.8
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 4.8e-74 281.6 192 77.1
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.8e-74 281.6 187 79.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 6.3e-74 281.2 193 77.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 8.2e-74 280.8 193 77.2
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.4e-73 280.0 191 78.5
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-73 279.6 197 74.1
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.1e-73 278.5 192 77.1
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 4.1e-73 278.5 198 75.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 5.3e-73 278.1 188 77.7
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 5.3e-73 278.1 188 78.2
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 5.3e-73 278.1 190 77.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.9e-73 277.7 187 78.1
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.9e-73 277.7 198 74.7
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 9.0e-73 277.3 193 76.2
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 9.0e-73 277.3 188 78.2
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-72 276.9 189 77.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.2e-72 276.9 192 76.6
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 193 76.2
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.0e-72 276.2 197 73.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.0e-72 276.2 197 73.6
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.0e-72 276.2 189 76.2
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.6e-72 275.8 192 75.5
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.6e-72 275.8 197 75.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.6e-72 275.8 188 77.7
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.4e-72 275.4 193 75.6
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.4e-72 275.4 193 77.2
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 4.5e-72 275.0 191 76.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 4.5e-72 275.0 199 74.4
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.9e-72 274.6 190 75.8
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.9e-72 274.6 186 76.9
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 5.9e-72 274.6 193 76.2
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 7.6e-72 274.2 202 73.3
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.0e-71 273.9 195 75.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.3e-71 273.5 190 75.3
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.3e-71 273.5 200 75.0
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.3e-71 273.5 195 73.8
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.3e-71 273.5 198 74.2
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.3e-71 273.5 186 78.5
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.2e-71 272.7 197 74.1
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 3.8e-71 271.9 200 73.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 5.0e-71 271.6 188 75.5
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.0e-71 271.6 189 75.7
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 6.5e-71 271.2 192 74.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.5e-71 270.8 199 71.9
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.1e-70 270.4 187 77.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.1e-70 270.4 194 75.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.1e-70 270.4 193 74.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.4e-70 270.0 193 74.6
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.4e-70 270.0 186 75.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.4e-70 270.0 186 75.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.5e-70 269.2 194 71.6
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.5e-70 269.2 201 72.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 4.2e-70 268.5 200 73.5
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.6e-69 266.5 194 74.2
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-69 266.5 196 73.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.6e-69 266.5 240 64.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.1e-69 266.2 200 74.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-69 266.2 188 73.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-69 266.2 188 73.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-69 266.2 188 73.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.1e-69 266.2 188 73.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.7e-69 265.8 192 74.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.6e-69 265.4 186 74.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.6e-69 265.4 192 74.5
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.1e-69 264.6 186 73.7
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.1e-69 264.6 186 74.2
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.1e-69 264.6 186 73.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 2.5e-67 259.2 200 70.5
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 6.3e-66 254.6 221 64.3
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.5e-64 250.0 230 61.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.6e-64 249.2 171 78.4
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.0e-63 247.3 168 78.6
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.0e-63 247.3 241 59.8
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.2e-63 246.1 189 70.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.6e-61 240.0 195 68.7
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.7e-61 239.2 158 79.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-60 237.3 246 55.7
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.8e-60 236.5 172 74.4
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.5e-59 233.4 193 66.8
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 6.3e-58 228.0 195 63.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-57 226.9 189 66.1
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 4.1e-57 225.3 187 63.6
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.6e-56 222.6 190 62.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.4e-56 222.2 149 78.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.2e-54 215.3 149 75.8
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 5.5e-54 214.9 152 75.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 3.6e-53 212.2 144 78.5
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 9.7e-51 204.1 193 56.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 4.8e-50 201.8 196 56.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-48 196.8 138 77.5
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.0e-48 196.4 144 74.3
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 5.5e-46 188.3 124 83.9
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.2e-46 188.0 224 52.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.2e-45 187.2 144 70.8
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.1e-45 186.4 140 70.7
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-44 183.7 132 75.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 4.0e-44 182.2 144 67.4
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.3e-41 171.8 100 85.0
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.3e-39 167.2 98 82.7
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-38 162.2 123 73.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-36 157.1 99 80.8
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.3e-36 156.4 133 67.7
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.2e-31 139.8 108 72.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.9e-31 139.4 82 85.4
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.9e-30 136.7 185 41.1
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-28 130.6 97 69.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.0e-28 129.0 112 63.4
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 8.8e-28 127.9 184 40.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 8.3e-26 121.3 98 68.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.4e-25 119.8 88 65.9
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 7.0e-25 118.2 178 36.5
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 7.0e-25 118.2 75 78.7
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 9.2e-25 117.9 97 67.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.5e-24 115.9 110 61.8
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.0e-23 114.4 180 37.8
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.3e-23 114.0 118 58.5
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.0e-20 104.4 66 77.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.6e-16 89.0 57 73.7
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.6e-11 73.2 61 68.9
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.8e-11 72.0 111 45.9
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.7e-10 70.5 111 45.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.7e-10 70.5 111 45.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.7e-10 69.3 111 45.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.4e-10 68.6 111 44.1
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.9e-09 67.0 115 42.6
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-07 60.5 36 80.6
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.7e-07 60.5 59 55.9


User provided reference genes

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