Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.3e-217 757.7 379 100.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 5.7e-209 730.7 379 96.8
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.4e-185 651.4 387 88.1
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.2e-184 649.0 385 87.8
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.0e-182 642.5 385 87.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 2.2e-181 639.0 386 85.5
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.4e-162 576.6 385 75.8
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.6e-161 572.4 372 76.9
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 5.8e-161 571.2 377 76.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.2e-160 569.3 391 73.9
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 8.3e-160 567.4 387 74.4
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.4e-159 566.6 385 74.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 4.1e-159 565.1 367 76.6
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 7.0e-159 564.3 352 78.7
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.7e-158 562.4 318 84.6
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.0e-158 561.2 388 75.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.3e-157 560.1 392 72.7
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.3e-157 560.1 389 73.8
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.7e-157 559.7 387 72.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 2.3e-157 559.3 381 74.3
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.3e-157 559.3 386 73.8
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 2.3e-157 559.3 382 77.5
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 5.0e-157 558.1 363 76.9
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.1e-156 557.0 352 77.3
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-156 556.6 322 83.9
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-156 556.6 380 74.5
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-156 556.2 364 76.9
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.9e-156 556.2 354 77.1
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.5e-156 555.8 319 83.1
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 3.3e-156 555.4 390 71.5
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 7.3e-156 554.3 375 74.7
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 9.5e-156 553.9 383 73.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.6e-155 553.1 328 80.8
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.6e-155 552.0 374 73.5
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 4.7e-155 551.6 391 72.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 8.1e-155 550.8 318 82.7
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 8.1e-155 550.8 378 74.9
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.1e-154 550.4 367 73.6
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.1e-154 550.4 394 71.3
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.8e-154 549.7 385 72.2
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 3.1e-154 548.9 328 79.6
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.1e-154 548.9 319 81.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 4.0e-154 548.5 328 79.0
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 4.0e-154 548.5 377 72.9
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.2e-154 548.1 365 73.7
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 6.8e-154 547.7 328 79.9
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 6.8e-154 547.7 391 70.8
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 6.8e-154 547.7 318 82.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 8.9e-154 547.4 318 82.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 8.9e-154 547.4 328 79.3
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.5e-153 546.6 321 81.6
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.5e-153 546.6 390 71.8
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 2.0e-153 546.2 328 79.3
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 2.0e-153 546.2 366 74.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 3.4e-153 545.4 370 73.5
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 4.4e-153 545.0 325 80.0
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 4.4e-153 545.0 325 80.0
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 4.4e-153 545.0 325 80.0
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.4e-153 545.0 318 82.1
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 4.4e-153 545.0 328 79.6
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.7e-152 543.1 375 72.5
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.9e-152 542.3 383 71.3
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 8.3e-152 540.8 371 73.6
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.1e-151 540.4 328 78.0
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.9e-151 539.7 395 70.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 5.4e-151 538.1 381 71.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 9.2e-151 537.3 372 71.8
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.2e-150 537.0 359 76.0
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.6e-150 535.0 398 69.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.7e-149 533.1 318 79.2
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.6e-148 528.1 364 71.4
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.1e-146 523.9 361 71.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.8e-146 523.1 321 76.9
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 2.4e-146 522.7 383 68.1
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.4e-146 522.7 410 64.6
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.6e-145 519.2 321 76.0
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 4.4e-145 518.5 383 68.9
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.9e-144 515.8 362 72.1
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 4.9e-144 515.0 350 73.1
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.2e-142 510.4 361 70.4
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 8.6e-141 504.2 316 76.9
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 8.6e-141 504.2 375 69.3
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.6e-137 492.7 276 85.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 3.4e-137 492.3 316 73.7
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 3.9e-133 478.8 276 83.3
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.6e-131 473.4 311 75.2
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 3.4e-129 465.7 268 83.6
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.1e-127 460.7 337 70.6
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 7.1e-127 458.0 267 81.6
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 9.3e-119 431.0 259 79.9
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 2.3e-117 426.4 322 63.4
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 8.7e-117 424.5 299 71.6
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 9.6e-116 421.0 314 62.4
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.0e-114 415.6 268 72.0
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 2.2e-112 409.8 318 60.4
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.3e-109 400.6 318 58.8
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 4.3e-108 395.6 267 73.8
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.2e-107 393.3 272 72.4
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 3.8e-104 382.5 294 67.7
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 5.0e-104 382.1 290 67.6
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-100 370.9 286 68.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 3.6e-94 349.4 235 71.5
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 9.7e-84 314.7 269 65.4
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 3.6e-78 296.2 326 53.1
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.7e-75 287.3 238 64.3
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-73 280.4 318 43.7
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-73 280.4 318 43.7
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 7.2e-71 271.9 311 45.0
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.2e-67 260.4 165 75.8
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.1e-66 256.5 154 79.2
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 9.1e-66 255.0 336 40.8
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.2e-62 244.6 166 74.7
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.5e-60 235.3 130 85.4
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 6.2e-38 162.5 402 30.6
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-37 161.8 91 86.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-34 149.8 109 63.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 6.2e-30 136.0 79 81.0
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.2e-28 131.7 90 68.9
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.4e-28 129.8 75 76.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 2.4e-21 107.5 127 45.7
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.2e-20 105.1 105 54.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.1e-17 94.4 56 78.6
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 6.0e-17 92.8 111 54.1
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.3e-16 91.7 54 79.6
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 3.9e-16 90.1 75 61.3
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 9.6e-15 85.5 58 79.3
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 9.6e-15 85.5 47 87.2
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.6e-14 84.7 95 52.6
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.6e-14 83.6 53 71.7
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.6e-14 83.6 53 71.7
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.7e-11 74.7 290 28.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 3.8e-11 73.6 294 26.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.8e-11 73.6 298 27.5
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 6.4e-11 72.8 44 81.8
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 8.4e-11 72.4 275 25.8
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 8.4e-11 72.4 107 45.8
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.4e-10 71.6 348 25.9
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.9e-10 71.2 348 24.7
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.4e-10 70.9 275 25.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.2e-10 70.5 298 28.5
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 4.2e-10 70.1 40 80.0
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 7.1e-10 69.3 276 26.4
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.1e-10 69.3 75 50.7
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 7.1e-10 69.3 345 24.6
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 9.3e-10 68.9 277 24.5
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 9.3e-10 68.9 277 24.5
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 9.3e-10 68.9 276 25.7
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.2e-09 68.6 276 25.4
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.2e-09 68.6 299 24.4
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.2e-09 68.6 291 25.1
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.6e-09 68.2 285 23.5
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.5e-09 67.0 290 25.2
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 4.6e-09 66.6 275 24.7
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 4.6e-09 66.6 275 24.7
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 4.6e-09 66.6 42 76.2
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 4.6e-09 66.6 343 26.2
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 7.9e-09 65.9 275 25.1
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.0e-08 65.5 293 24.6
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.0e-08 65.5 343 25.4
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 1.0e-08 65.5 282 27.0
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.3e-08 65.1 301 23.6
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.8e-08 64.7 339 23.9
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 2.3e-08 64.3 258 25.2
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 3.0e-08 63.9 258 25.2
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 3.0e-08 63.9 337 24.0
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 3.9e-08 63.5 80 45.0
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 5.1e-08 63.2 281 24.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 6.7e-08 62.8 298 25.2
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 8.7e-08 62.4 170 32.4
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 8.7e-08 62.4 277 23.1
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.5e-07 61.6 354 24.9
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 2.5e-07 60.8 292 22.3
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.5e-07 60.8 329 24.6
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.3e-07 60.5 294 25.9
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 7.4e-07 59.3 277 24.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 7.4e-07 59.3 338 22.8
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 9.6e-07 58.9 281 24.2
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.3e-06 58.5 269 23.0
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 8.1e-06 55.8 299 24.1


User provided reference genes

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