Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000882g0060 Nicotiana tabacum HOM05D003505 ORTHO05D002366 1.3e-54 216.1 106 100.0
Nitab4.5_0001501g0010 Nicotiana tabacum HOM05D003505 ORTHO05D002366 2.7e-47 191.8 108 91.7
Peaxi162Scf01068g00019 Petunia axillaris HOM05D003505 ORTHO05D002366 3.4e-34 148.3 126 69.0
Manes.05G050600 Manihot esculenta HOM05D003505 ORTHO05D002366 2.3e-30 135.6 125 61.6
Manes.01G270500 Manihot esculenta HOM05D003505 ORTHO05D002366 1.9e-29 132.5 122 63.1
Gohir.A07G147600 Gossypium hirsutum HOM05D003505 ORTHO05D002366 2.5e-29 132.1 126 60.3
Duzib138G0639 Durio zibethinus HOM05D003505 ORTHO05D002366 3.3e-29 131.7 124 59.7
Gorai.001G175800 Gossypium raimondii HOM05D003505 ORTHO05D002366 3.3e-29 131.7 126 60.3
Dinv43655 Davidia involucrata HOM05D003505 ORTHO05D002366 4.3e-29 131.3 131 58.0
Peaxi162Scf00377g00610 Petunia axillaris HOM05D003505 ORTHO05D002366 4.3e-29 131.3 108 67.6
Gohir.D07G153700 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.2e-28 129.8 126 59.5
Gohir.D08G158600 Gossypium hirsutum HOM05D003505 ORTHO05D002366 4.7e-28 127.9 124 59.7
Gorai.004G164800 Gossypium raimondii HOM05D003505 ORTHO05D002366 4.7e-28 127.9 124 59.7
CiPaw.13G030800 Carya illinoinensis HOM05D003505 ORTHO05D002366 6.2e-28 127.5 124 60.5
Ciclev10022623m.g Citrus clementina HOM05D003505 ORTHO05D002366 8.0e-28 127.1 134 57.5
CAN.G412.3 Capsicum annuum HOM05D003505 ORTHO05D002366 2.3e-27 125.6 131 64.9
COL.COLO4_12464 Corchorus olitorius HOM05D003505 ORTHO05D002366 3.1e-27 125.2 126 58.7
Duzib133G1117 Durio zibethinus HOM05D003505 ORTHO05D002366 3.1e-27 125.2 124 58.1
TAR375G0757 Trochodendron aralioides HOM05D003505 ORTHO05D002366 4.0e-27 124.8 129 57.4
CSS0026198 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 6.8e-27 124.0 140 55.0
CSS0041341 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 6.8e-27 124.0 140 55.0
Gohir.A08G137500 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.5e-26 122.9 124 58.1
Sabra14G0042500 Salix brachista HOM05D003505 ORTHO05D002366 1.5e-26 122.9 131 57.3
Haze_02729 Corylus avellana HOM05D003505 ORTHO05D002366 2.0e-26 122.5 124 58.1
Thecc.01G386300 Theobroma cacao HOM05D003505 ORTHO05D002366 3.4e-26 121.7 125 60.0
Cfa011133 Carpinus fangiana HOM05D003505 ORTHO05D002366 4.4e-26 121.3 124 57.3
HanXRQChr16g0519671 Helianthus annuus HOM05D003505 ORTHO05D002366 4.4e-26 121.3 123 55.3
Potri.014G058300 Populus trichocarpa HOM05D003505 ORTHO05D002366 5.8e-26 120.9 131 55.7
Rhsim07G0032600 Rhododendron simsii HOM05D003505 ORTHO05D002366 5.8e-26 120.9 135 54.1
CSS0005332 Camellia sinensis var. sinensis HOM05D003505 ORTHO05D002366 7.5e-26 120.6 127 54.3
Cpa.g.sc149.19 Carica papaya HOM05D003505 ORTHO05D002366 7.5e-26 120.6 130 56.9
Lalb_Chr03g0039921 Lupinus albus HOM05D003505 ORTHO05D002366 7.5e-26 120.6 127 57.5
Lalb_Chr19g0127471 Lupinus albus HOM05D003505 ORTHO05D002366 7.5e-26 120.6 125 58.4
Potri.002G142600 Populus trichocarpa HOM05D003505 ORTHO05D002366 7.5e-26 120.6 131 55.7
PGR042G1548 Punica granatum HOM05D003505 ORTHO05D002366 1.3e-25 119.8 124 58.1
vmacro13460 Vaccinium macrocarpon HOM05D003505 ORTHO05D002366 1.3e-25 119.8 133 55.6
GSVIVG01018208001 Vitis vinifera HOM05D003505 ORTHO05D002366 1.3e-25 119.8 127 56.7
Lj9A562T33 Lonicera japonica HOM05D003505 ORTHO05D002366 1.7e-25 119.4 125 57.6
Dinv44107 Davidia involucrata HOM05D003505 ORTHO05D002366 3.7e-25 118.2 127 56.7
Hma1.2p1_0341F.1_g130320 Hydrangea macrophylla HOM05D003505 ORTHO05D002366 6.4e-25 117.5 132 51.5
Lalb_Chr01g0021501 Lupinus albus HOM05D003505 ORTHO05D002366 6.4e-25 117.5 126 56.3
PGSC0003DMG400011758 Solanum tuberosum HOM05D003505 ORTHO05D002366 8.3e-25 117.1 126 60.3
Lj1g0012963 Lotus japonicus HOM05D003505 ORTHO05D002366 1.9e-24 115.9 125 55.2
Actinidia12174 Actinidia chinensis HOM05D003505 ORTHO05D002366 2.4e-24 115.5 128 53.9
QL04p035739 Quercus lobata HOM05D003505 ORTHO05D002366 2.4e-24 115.5 125 56.8
Oeu051914.1 Olea europaea HOM05D003505 ORTHO05D002366 4.1e-24 114.8 121 53.7
Sabra02G0110900 Salix brachista HOM05D003505 ORTHO05D002366 4.1e-24 114.8 129 55.0
Actinidia22828 Actinidia chinensis HOM05D003505 ORTHO05D002366 5.4e-24 114.4 128 53.1
Cc02_g24570 Coffea canephora HOM05D003505 ORTHO05D002366 7.0e-24 114.0 126 52.4
Lsat_1_v5_gn_4_44241 Lactuca sativa HOM05D003505 ORTHO05D002366 1.2e-23 113.2 123 54.5
CANSAT21G1307 Cannabis sativa HOM05D003505 ORTHO05D002366 1.6e-23 112.8 129 51.9
TWI14G1426 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 1.6e-23 112.8 128 54.7
Glyma.01G076200 Glycine max HOM05D003505 ORTHO05D002366 2.0e-23 112.5 128 56.2
Medtr7g445390 Medicago truncatula HOM05D003505 ORTHO05D002366 2.0e-23 112.5 127 55.9
Nitab4.5_0000706g0170 Nicotiana tabacum HOM05D003505 ORTHO05D002366 2.0e-23 112.5 131 54.2
Phvul.008G156800 Phaseolus vulgaris HOM05D003505 ORTHO05D002366 2.7e-23 112.1 128 57.0
VMungo1383G1044 Vigna mungo HOM05D003505 ORTHO05D002366 3.5e-23 111.7 127 57.5
Psat3g154600 Pisum sativum HOM05D003505 ORTHO05D002366 6.0e-23 110.9 125 56.8
Solyc10g018640.2 Solanum lycopersicum HOM05D003505 ORTHO05D002366 6.0e-23 110.9 126 57.9
arahy.Tifrunner.gnm1.ann1.ZUXP3H Arachis hypogaea HOM05D003505 ORTHO05D002366 7.8e-23 110.5 135 56.3
Nn1g00971 Nelumbo nucifera HOM05D003505 ORTHO05D002366 1.7e-22 109.4 131 48.9
Phvul.010G056400 Phaseolus vulgaris HOM05D003505 ORTHO05D002366 5.0e-22 107.8 128 53.9
TPR.G39106 Trifolium pratense HOM05D003505 ORTHO05D002366 5.0e-22 107.8 123 51.2
arahy.Tifrunner.gnm1.ann1.BCD3BN Arachis hypogaea HOM05D003505 ORTHO05D002366 6.6e-22 107.5 129 55.8
Aqoxy5G03859 Aquilegia oxysepala HOM05D003505 ORTHO05D002366 1.1e-21 106.7 125 51.2
arahy.Tifrunner.gnm1.ann1.YG9RMG Arachis hypogaea HOM05D003505 ORTHO05D002366 1.1e-21 106.7 121 54.5
Nitab4.5_0001823g0040 Nicotiana tabacum HOM05D003505 ORTHO05D002366 1.9e-21 105.9 131 51.1
Prupe.2G135200 Prunus persica HOM05D003505 ORTHO05D002366 1.9e-21 105.9 140 48.6
Atru.chr5.213 Acer truncatum HOM05D003505 ORTHO05D002366 2.5e-21 105.5 115 53.9
HanXRQChr04g0123431 Helianthus annuus HOM05D003505 ORTHO05D002366 2.5e-21 105.5 129 48.8
Oeu009617.1 Olea europaea HOM05D003505 ORTHO05D002366 2.5e-21 105.5 121 52.9
Oeu009618.1 Olea europaea HOM05D003505 ORTHO05D002366 2.5e-21 105.5 121 52.9
TWI23G0353 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 3.3e-21 105.1 130 50.0
Glyma.07G109200 Glycine max HOM05D003505 ORTHO05D002366 4.3e-21 104.8 127 53.5
Ca_07813_v3 Cicer arietinum L. HOM05D003505 ORTHO05D002366 5.6e-21 104.4 125 54.4
HanXRQChr13g0422861 Helianthus annuus HOM05D003505 ORTHO05D002366 7.3e-21 104.0 137 45.3
Gohir.D12G098400 Gossypium hirsutum HOM05D003505 ORTHO05D002366 9.5e-21 103.6 127 50.4
HanXRQChr06g0168871 Helianthus annuus HOM05D003505 ORTHO05D002366 1.2e-20 103.2 124 50.0
Glyma.03G117800 Glycine max HOM05D003505 ORTHO05D002366 2.8e-20 102.1 127 50.4
Lj3g0023797 Lotus japonicus HOM05D003505 ORTHO05D002366 3.6e-20 101.7 123 48.0
SalBow5G3293 Salvia bowleyana HOM05D003505 ORTHO05D002366 4.7e-20 101.3 130 50.8
unitig_76.g29077 Utricularia gibba HOM05D003505 ORTHO05D002366 4.7e-20 101.3 124 49.2
MD07G1111800 Malus domestica HOM05D003505 ORTHO05D002366 6.2e-20 100.9 138 49.3
Sopen10g008430 Solanum pennellii HOM05D003505 ORTHO05D002366 6.2e-20 100.9 133 51.1
CiPaw.14G024300 Carya illinoinensis HOM05D003505 ORTHO05D002366 1.1e-19 100.1 131 50.4
Glyma.11G165291 Glycine max HOM05D003505 ORTHO05D002366 2.3e-19 99.0 130 51.5
Lsat_1_v5_gn_7_9941 Lactuca sativa HOM05D003505 ORTHO05D002366 3.1e-19 98.6 153 44.4
MSTRG.20717 Avicennia marina HOM05D003505 ORTHO05D002366 5.2e-19 97.8 128 50.8
Psat4g209000 Pisum sativum HOM05D003505 ORTHO05D002366 5.2e-19 97.8 119 49.6
TAR374G1750 Trochodendron aralioides HOM05D003505 ORTHO05D002366 1.5e-18 96.3 117 48.7
Sopen01g036470 Solanum pennellii HOM05D003505 ORTHO05D002366 2.0e-18 95.9 136 50.0
Oeu000042.1 Olea europaea HOM05D003505 ORTHO05D002366 3.4e-18 95.1 121 49.6
TWI59G1259 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 5.8e-18 94.4 132 47.7
MBI04_g09513_MAGBIO Magnolia biondii HOM05D003505 ORTHO05D002366 9.8e-18 93.6 127 48.0
MSTRG.17152 Avicennia marina HOM05D003505 ORTHO05D002366 1.3e-17 93.2 129 49.6
Solyc01g090740.3 Solanum lycopersicum HOM05D003505 ORTHO05D002366 1.3e-17 93.2 136 49.3
HanXRQChr03g0093301 Helianthus annuus HOM05D003505 ORTHO05D002366 2.9e-17 92.0 125 48.0
MD00G1166100 Malus domestica HOM05D003505 ORTHO05D002366 4.9e-17 91.3 135 46.7
Sc02g0002860 Simmondsia chinensis HOM05D003505 ORTHO05D002366 4.9e-17 91.3 118 50.8
CAN.G899.16 Capsicum annuum HOM05D003505 ORTHO05D002366 6.4e-17 90.9 137 47.4
arahy.Tifrunner.gnm1.ann1.4HJ0IT Arachis hypogaea HOM05D003505 ORTHO05D002366 8.3e-17 90.5 115 44.3
MELO3C000279.2 Cucumis melo HOM05D003505 ORTHO05D002366 1.4e-16 89.7 132 43.9
ECA240G0619 Erigeron canadensis HOM05D003505 ORTHO05D002366 1.9e-16 89.4 116 50.0
CsaV3_6G009110 Cucumis sativus L. HOM05D003505 ORTHO05D002366 2.4e-16 89.0 130 44.6
THA.LOC104814079 Tarenaya hassleriana HOM05D003505 ORTHO05D002366 2.4e-16 89.0 131 46.6
FvH4_7g10710 Fragaria vesca HOM05D003505 ORTHO05D002366 5.4e-16 87.8 134 44.8
FAN06G1069 Fragaria x ananassa HOM05D003505 ORTHO05D002366 5.4e-16 87.8 134 44.8
FAN06G2523 Fragaria x ananassa HOM05D003505 ORTHO05D002366 5.4e-16 87.8 134 44.8
FAN10G2627 Fragaria x ananassa HOM05D003505 ORTHO05D002366 5.4e-16 87.8 134 44.8
FAN03G2272 Fragaria x ananassa HOM05D003505 ORTHO05D002366 9.2e-16 87.0 134 44.8
FAN03G3486 Fragaria x ananassa HOM05D003505 ORTHO05D002366 9.2e-16 87.0 134 44.8
ECA236G2569 Erigeron canadensis HOM05D003505 ORTHO05D002366 1.2e-15 86.7 124 47.6
FAN01G1637 Fragaria x ananassa HOM05D003505 ORTHO05D002366 1.2e-15 86.7 134 44.0
Gohir.A12G095800 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.2e-15 86.7 127 46.5
unitig_750.g28397 Utricularia gibba HOM05D000522 ORTHO05D000565 1.2e-15 86.7 142 40.8
Gorai.008G107200 Gossypium raimondii HOM05D003505 ORTHO05D002366 2.1e-15 85.9 113 48.7
Psat4g208960 Pisum sativum HOM05D003505 ORTHO05D002366 2.1e-15 85.9 120 45.8
Migut.N01762 Erythranthe guttata HOM05D003505 ORTHO05D002366 2.3e-14 82.4 122 46.7
PGR004G0574 Punica granatum HOM05D003505 ORTHO05D002366 5.1e-14 81.3 124 41.9
Medtr8g005880 Medicago truncatula HOM05D003505 ORTHO05D002366 6.6e-14 80.9 107 45.8
SGA_v2.0_scaffold153G36953 Striga asiatica HOM05D003505 ORTHO05D002366 8.6e-14 80.5 128 46.9
CARHR170920 Cardamine hirsuta HOM05D003505 ORTHO05D002366 1.1e-13 80.1 131 42.7
Eucgr.E01602 Eucalyptus grandis HOM05D003505 ORTHO05D002366 1.5e-13 79.7 121 45.5
DCAR_031871 Daucus carota HOM05D003505 ORTHO05D002366 5.6e-13 77.8 116 43.1
Sed0026157 Sechium edule HOM05D003505 ORTHO05D002366 9.5e-13 77.0 117 39.3
AL5G42820 Arabidopsis lyrata HOM05D003505 ORTHO05D002366 1.2e-12 76.6 129 44.2
MSTRG.20718 Avicennia marina HOM05D003505 ORTHO05D002366 1.2e-12 76.6 121 42.1
unitig_26.g8880 Utricularia gibba HOM05D003505 ORTHO05D002366 2.8e-12 75.5 113 44.2
THA.LOC104817209 Tarenaya hassleriana HOM05D003505 ORTHO05D002366 3.6e-12 75.1 117 43.6
BolC8t51142H Brassica oleracea HOM05D003505 ORTHO05D002366 4.7e-12 74.7 129 44.2
Actinidia22774 Actinidia chinensis HOM05D003505 ORTHO05D002366 6.2e-12 74.3 33 90.9
AT3G60520 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 6.2e-12 74.3 129 43.4
BcaC07g42343 Brassica carinata HOM05D003505 ORTHO05D002366 6.2e-12 74.3 130 41.5
PSO832G0403 Papaver somniferum HOM05D003505 ORTHO05D002366 8.1e-12 73.9 133 42.1
A09p52760 Brassica napus HOM05D003505 ORTHO05D002366 1.8e-11 72.8 129 43.4
BraA09t40706Z Brassica rapa HOM05D003505 ORTHO05D002366 1.8e-11 72.8 129 43.4
Aa31LG10G14800 Aethionema arabicum HOM05D003505 ORTHO05D002366 2.3e-11 72.4 132 44.7
C08p35500 Brassica napus HOM05D003505 ORTHO05D002366 2.3e-11 72.4 129 43.4
Carub.0005s2726 Capsella rubella HOM05D003505 ORTHO05D002366 2.3e-11 72.4 133 42.9
Eucgr.D02503 Eucalyptus grandis HOM05D003505 ORTHO05D002366 2.3e-11 72.4 137 40.1
PGSC0003DMG400025978 Solanum tuberosum HOM05D003505 ORTHO05D002366 5.2e-11 71.2 33 87.9
BraA07t30155Z Brassica rapa HOM05D003505 ORTHO05D002366 6.8e-11 70.9 133 41.4
Thhalv10006310m.g Eutrema salsugineum HOM05D003505 ORTHO05D002366 6.8e-11 70.9 130 41.5
PSO063G1028 Papaver somniferum HOM05D003505 ORTHO05D002366 6.8e-11 70.9 138 39.1
BcaC08g45070 Brassica carinata HOM05D003505 ORTHO05D002366 8.9e-11 70.5 133 41.4
C06p26790 Brassica napus HOM05D003505 ORTHO05D002366 8.9e-11 70.5 133 41.4
Sp5g02700 Schrenkiella parvula HOM05D003505 ORTHO05D002366 1.2e-10 70.1 131 43.5
RcHm_v2.0_Chr1g0348651 Rosa chinensis HOM05D003505 ORTHO05D002366 1.5e-10 69.7 120 43.3
Ah.05g173520 Amaranthus hybridus HOM05D003505 ORTHO05D002366 3.4e-10 68.6 149 36.2
Os04g0551600 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 5.8e-10 67.8 125 37.6
TPR.G28736 Trifolium pratense HOM05D003505 ORTHO05D002366 5.8e-10 67.8 119 41.2
Nn6g33930 Nelumbo nucifera HOM05D003505 ORTHO05D002366 9.9e-10 67.0 33 84.8
HPP92_027433 Vanilla planifolia HOM05D003505 ORTHO05D002366 1.3e-09 66.6 117 38.5
AT1G02070 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 2.2e-09 65.9 131 38.2
Zm00001eb249520 Zea mays HOM05D003505 ORTHO05D002366 4.9e-09 64.7 129 38.8
MELO3C005964.2 Cucumis melo HOM05D003505 ORTHO05D002366 6.4e-09 64.3 110 42.7
SGA_v2.0_scaffold52G19189 Striga asiatica HOM05D003505 ORTHO05D002366 8.4e-09 63.9 115 43.5
Sp1g00230 Schrenkiella parvula HOM05D003505 ORTHO05D002366 1.1e-08 63.5 127 38.6
CsaV3_3G007420 Cucumis sativus L. HOM05D003505 ORTHO05D002366 1.4e-08 63.2 98 41.8
DCAR_025090 Daucus carota HOM05D003505 ORTHO05D002366 1.9e-08 62.8 123 39.0
DCAR_025091 Daucus carota HOM05D003505 ORTHO05D002366 1.9e-08 62.8 124 40.3
Sed0014861 Sechium edule HOM05D003505 ORTHO05D002366 2.4e-08 62.4 105 41.0
Zm00001eb074720 Zea mays HOM05D003505 ORTHO05D002366 2.4e-08 62.4 28 85.7
Aa31LG1G11400 Aethionema arabicum HOM05D003505 ORTHO05D002366 4.1e-08 61.6 132 36.4
Os02g0658200 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 5.4e-08 61.2 119 36.1
Zm00001eb429690 Zea mays HOM05D003505 ORTHO05D002366 5.4e-08 61.2 47 61.7
Hund17064 Selenicereus undatus HOM05D003505 ORTHO05D002366 9.2e-08 60.5 154 33.8
Carub.0001s0016 Capsella rubella HOM05D003505 ORTHO05D002366 1.6e-07 59.7 134 35.1
CARHR000260 Cardamine hirsuta HOM05D003505 ORTHO05D002366 1.6e-07 59.7 132 35.6
ATR0317G107 Amborella trichopoda HOM05D003505 ORTHO05D002366 2.1e-07 59.3 116 36.2
BcaNung05014 Brassica carinata HOM05D003505 ORTHO05D002366 1.3e-06 56.6 138 36.2
C08p54050 Brassica napus HOM05D003505 ORTHO05D002366 1.3e-06 56.6 138 36.2
BolC8t52915H Brassica oleracea HOM05D003505 ORTHO05D002366 1.3e-06 56.6 138 36.2
Thhalv10009084m.g Eutrema salsugineum HOM05D003505 ORTHO05D002366 3.0e-06 55.5 134 34.3
ClCG05G000270 Citrullus lanatus HOM05D003505 ORTHO05D002366 3.9e-06 55.1 104 38.5
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.9e-06 55.1 33 66.7
BraA09t42276Z Brassica rapa HOM05D003505 ORTHO05D002366 5.1e-06 54.7 138 35.5


User provided reference genes

Program Settings