Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000881g0040 Nicotiana tabacum HOM05D002761 ORTHO05D003351 3.4e-36 154.5 76 100.0
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 3.0e-16 88.2 71 63.4
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 3.0e-16 88.2 71 63.4
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 3.9e-16 87.8 71 63.4
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 8.6e-16 86.7 68 70.6
Nitab4.5_0001579g0100 Nicotiana tabacum HOM05D002761 ORTHO05D003351 1.1e-15 86.3 68 70.6
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 1.1e-15 86.3 71 62.0
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 9.5e-15 83.2 66 69.7
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 1.6e-14 82.4 56 67.9
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 1.6e-14 82.4 66 63.6
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 3.6e-14 81.3 69 59.4
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 3.6e-14 81.3 62 67.7
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 8.1e-14 80.1 69 56.5
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 1.8e-13 79.0 57 68.4
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 1.8e-13 79.0 62 64.5
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 2.4e-13 78.6 57 68.4
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 3.1e-13 78.2 62 62.9
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 3.1e-13 78.2 68 61.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 5.2e-13 77.4 71 56.3
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 5.2e-13 77.4 59 66.1
Duzib177G0575 Durio zibethinus HOM05D002761 ORTHO05D003351 6.8e-13 77.0 69 55.1
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 8.9e-13 76.6 57 64.9
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 1.2e-12 76.3 68 60.3
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 1.2e-12 76.3 68 60.3
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.2e-12 76.3 64 64.1
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 1.2e-12 76.3 64 59.4
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 1.2e-12 76.3 64 62.5
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 1.2e-12 76.3 64 53.1
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 1.2e-12 76.3 57 64.9
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 1.2e-12 76.3 65 61.5
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 1.5e-12 75.9 70 57.1
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 1.5e-12 75.9 73 52.1
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 1.5e-12 75.9 65 58.5
Lj5A627T18 Lonicera japonica HOM05D002761 ORTHO05D003351 1.5e-12 75.9 60 65.0
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 1.5e-12 75.9 69 59.4
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 2.0e-12 75.5 61 62.3
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 2.0e-12 75.5 69 55.1
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 2.0e-12 75.5 73 52.1
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 2.0e-12 75.5 60 63.3
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 2.6e-12 75.1 61 63.9
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.6e-12 75.1 65 58.5
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 3.4e-12 74.7 61 60.7
AUR62022701 Chenopodium quinoa HOM05D002761 ORTHO05D003351 4.4e-12 74.3 63 57.1
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 4.4e-12 74.3 65 58.5
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 4.4e-12 74.3 65 56.9
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 4.4e-12 74.3 59 61.0
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 5.8e-12 73.9 60 63.3
Lj5P629G11 Lonicera japonica HOM05D002761 ORTHO05D003351 5.8e-12 73.9 60 63.3
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 5.8e-12 73.9 65 58.5
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 7.6e-12 73.6 69 55.1
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 7.6e-12 73.6 65 56.9
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 7.6e-12 73.6 74 54.1
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 7.6e-12 73.6 68 54.4
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 7.6e-12 73.6 65 56.9
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 7.6e-12 73.6 71 53.5
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 7.6e-12 73.6 71 52.1
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 7.6e-12 73.6 61 57.4
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 9.9e-12 73.2 64 59.4
Lj5A669G10 Lonicera japonica HOM05D002761 ORTHO05D003351 9.9e-12 73.2 69 56.5
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 1.3e-11 72.8 63 57.1
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 1.3e-11 72.8 64 57.8
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 1.7e-11 72.4 58 58.6
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 2.2e-11 72.0 60 61.7
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 2.2e-11 72.0 55 63.6
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 2.2e-11 72.0 69 53.6
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 2.2e-11 72.0 60 60.0
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 2.2e-11 72.0 62 56.5
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 2.9e-11 71.6 57 59.6
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 2.9e-11 71.6 62 59.7
Lj5P626T11 Lonicera japonica HOM05D002761 ORTHO05D003351 2.9e-11 71.6 60 61.7
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 2.9e-11 71.6 64 56.2
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 2.9e-11 71.6 68 54.4
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 2.9e-11 71.6 62 59.7
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 3.8e-11 71.2 74 55.4
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 3.8e-11 71.2 64 51.6
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 3.8e-11 71.2 60 60.0
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 3.8e-11 71.2 69 55.1
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 4.9e-11 70.9 74 52.7
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 6.4e-11 70.5 55 63.6
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 6.4e-11 70.5 74 48.6
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 8.4e-11 70.1 61 57.4
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 1.1e-10 69.7 61 57.4
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 1.1e-10 69.7 61 57.4
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 1.1e-10 69.7 60 58.3
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 1.1e-10 69.7 70 51.4
MBI16_g07686_MAGBIO Magnolia biondii HOM05D002761 ORTHO05D003351 1.4e-10 69.3 64 53.1
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 1.4e-10 69.3 68 52.9
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 1.4e-10 69.3 69 50.7
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 1.9e-10 68.9 61 57.4
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 1.9e-10 68.9 68 47.1
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 1.9e-10 68.9 61 55.7
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 1.9e-10 68.9 60 58.3
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 1.9e-10 68.9 55 60.0
RcHm_v2.0_Chr7g0217311 Rosa chinensis HOM05D002761 ORTHO05D003351 1.9e-10 68.9 55 56.4
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 1.9e-10 68.9 61 57.4
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 1.9e-10 68.9 70 52.9
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 2.4e-10 68.6 56 58.9
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 2.4e-10 68.6 59 59.3
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 3.2e-10 68.2 62 58.1
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 4.1e-10 67.8 50 60.0
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 4.1e-10 67.8 55 58.2
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 4.1e-10 67.8 63 54.0
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 4.1e-10 67.8 69 50.7
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 5.4e-10 67.4 61 55.7
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 5.4e-10 67.4 61 55.7
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 5.4e-10 67.4 55 60.0
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 5.4e-10 67.4 55 60.0
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 5.4e-10 67.4 55 60.0
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 5.4e-10 67.4 55 60.0
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 7.1e-10 67.0 68 55.9
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 9.2e-10 66.6 61 54.1
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 9.2e-10 66.6 61 57.4
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 1.2e-09 66.2 68 54.4
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 1.6e-09 65.9 56 53.6
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.6e-09 65.9 65 47.7
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 1.6e-09 65.9 61 55.7
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 2.1e-09 65.5 61 54.1
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 2.1e-09 65.5 70 51.4
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 2.1e-09 65.5 60 53.3
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 2.1e-09 65.5 53 60.4
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 2.1e-09 65.5 65 50.8
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 2.7e-09 65.1 68 45.6
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 3.5e-09 64.7 65 47.7
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 4.6e-09 64.3 61 54.1
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 4.6e-09 64.3 57 52.6
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 6.0e-09 63.9 65 47.7
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 7.8e-09 63.5 65 49.2
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 7.8e-09 63.5 65 47.7
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 7.8e-09 63.5 65 49.2
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 7.8e-09 63.5 60 55.0
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 1.0e-08 63.2 59 54.2
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 1.0e-08 63.2 87 43.7
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 1.3e-08 62.8 59 55.9
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 1.3e-08 62.8 57 56.1
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 1.7e-08 62.4 57 50.9
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 1.7e-08 62.4 68 44.1
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 1.7e-08 62.4 57 50.9
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 1.7e-08 62.4 68 44.1
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 1.7e-08 62.4 57 50.9
Haze_01552 Corylus avellana HOM05D002761 ORTHO05D003351 1.7e-08 62.4 59 54.2
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 2.3e-08 62.0 67 52.2
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 3.0e-08 61.6 60 50.0
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 5.1e-08 60.8 56 50.0
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 5.1e-08 60.8 51 60.8
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 8.7e-08 60.1 57 50.9
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 8.7e-08 60.1 64 48.4
AUR62004635 Chenopodium quinoa HOM05D002761 ORTHO05D003351 1.5e-07 59.3 53 56.6
Lj4A474G12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.5e-07 59.3 80 45.0
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 3.3e-07 58.2 59 45.8
Rhsim06G0031300 Rhododendron simsii HOM05D002761 ORTHO05D003351 3.3e-07 58.2 74 39.2
QL08p012793 Quercus lobata HOM05D002761 ORTHO05D003351 5.6e-07 57.4 75 48.0
QL08p012947 Quercus lobata HOM05D002761 ORTHO05D003351 5.6e-07 57.4 75 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2494 Anthoceros agrestis HOM05D002761 ORTHO05D003351 7.3e-07 57.0 55 54.5
Lj5C655G9 Lonicera japonica HOM05D002180 ORTHO05D001339 4.7e-06 54.3 42 61.9
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 4.7e-06 54.3 52 55.8
Aqoxy1G03086 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 6.2e-06 53.9 51 56.9


User provided reference genes

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