Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 5.4e-187 657.5 334 100.0
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.5e-173 612.8 334 94.0
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.4e-134 483.4 319 79.3
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 3.9e-129 465.3 323 75.5
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.9e-124 449.1 337 71.2
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 3.6e-122 442.2 337 70.6
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.6e-122 441.8 337 70.3
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.5e-91 340.5 339 57.2
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.6e-88 329.7 324 57.4
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 4.9e-87 325.5 339 54.6
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 2.4e-86 323.2 337 52.8
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.0e-85 320.1 339 54.3
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 8.0e-82 308.1 338 50.9
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.6e-80 303.1 340 54.1
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.4e-80 302.8 340 52.4
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 2.9e-79 299.7 356 51.4
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 8.3e-79 298.1 344 49.7
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 5.9e-77 292.0 347 49.9
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 2.3e-73 280.0 340 51.8
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 9.8e-72 274.6 250 63.2
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 7.8e-69 265.0 346 48.3
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 6.6e-68 261.9 226 61.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.2e-66 257.7 340 45.6
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.4e-65 254.2 342 48.5
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.8e-65 253.8 341 45.7
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.2e-64 251.1 344 45.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.6e-64 250.0 361 44.3
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.1e-62 244.6 353 44.2
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.9e-62 243.8 346 44.2
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.6e-61 240.7 339 46.6
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.3e-59 233.0 251 53.0
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 4.3e-59 232.6 356 43.8
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 4.3e-59 232.6 252 53.6
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 9.5e-59 231.5 425 39.3
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.6e-58 230.7 349 42.1
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 4.7e-58 229.2 338 44.4
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 8.1e-58 228.4 312 47.8
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.4e-57 227.6 323 45.5
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.4e-57 227.6 258 51.6
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.1e-57 226.5 318 45.6
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.2e-56 224.6 342 44.7
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.5e-56 224.2 309 47.2
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 7.6e-56 221.9 302 47.4
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.3e-55 221.1 311 46.6
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 3.8e-55 219.5 302 46.0
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 8.4e-55 218.4 254 50.4
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.9e-54 217.2 339 43.4
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.7e-52 210.7 247 50.6
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 3.9e-52 209.5 303 46.5
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 6.6e-52 208.8 309 45.0
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 8.6e-52 208.4 318 43.1
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 8.1e-50 201.8 224 53.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.5e-48 197.6 311 42.4
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.5e-48 197.6 346 39.9
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.4e-48 196.4 357 40.9
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 5.8e-48 195.7 359 40.4
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 7.6e-48 195.3 303 42.2
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 2.2e-47 193.7 311 43.1
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 3.8e-47 193.0 346 39.6
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.9e-46 190.7 253 45.5
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 3.5e-45 186.4 300 43.0
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.6e-45 186.0 311 39.9
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.3e-44 183.7 311 39.5
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.1e-43 181.4 319 38.9
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.5e-43 181.0 293 42.3
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 7.3e-43 178.7 323 41.2
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.6e-42 177.6 333 38.4
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.1e-42 177.2 335 40.3
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 2.1e-42 177.2 323 42.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 3.6e-42 176.4 341 39.0
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 4.8e-42 176.0 298 40.9
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.8e-42 176.0 290 42.1
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.2e-42 175.6 310 40.6
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.4e-41 174.5 340 39.1
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.4e-41 173.7 319 42.0
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 3.1e-41 173.3 298 42.6
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 9.0e-41 171.8 290 41.0
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.2e-40 171.4 312 39.1
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 3.4e-40 169.9 340 39.7
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 9.9e-40 168.3 345 38.3
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.3e-39 167.9 300 42.0
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.4e-39 165.6 318 37.4
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 6.4e-39 165.6 360 37.2
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 4.2e-38 162.9 321 37.4
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 5.4e-38 162.5 343 38.8
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 5.4e-38 162.5 311 38.6
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 7.1e-38 162.2 332 36.1
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.2e-37 161.4 257 42.4
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.6e-37 161.0 336 37.5
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.7e-37 160.2 332 35.8
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.8e-36 157.5 343 35.0
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.3e-36 157.1 319 36.4
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.7e-36 155.6 223 45.3
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 8.7e-36 155.2 257 44.0
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.1e-35 154.8 209 46.9
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.9e-35 154.1 251 42.2
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.9e-35 154.1 304 38.5
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.5e-35 153.7 308 37.7
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 7.4e-35 152.1 352 36.1
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.3e-34 151.4 314 38.5
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.6e-34 151.0 269 37.5
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 3.6e-34 149.8 266 39.5
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.6e-34 149.8 339 36.6
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 6.2e-34 149.1 249 40.6
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 6.2e-34 149.1 271 36.2
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 6.2e-34 149.1 190 44.7
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 8.1e-34 148.7 306 34.6
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 8.1e-34 148.7 264 38.3
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.1e-33 148.3 264 40.2
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.1e-33 148.3 309 36.6
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.8e-33 147.5 252 39.7
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.8e-33 147.5 257 39.3
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.8e-33 147.5 243 41.2
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 2.4e-33 147.1 335 35.5
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 3.1e-33 146.7 257 38.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 3.1e-33 146.7 296 37.2
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 4.0e-33 146.4 278 38.1
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 5.3e-33 146.0 343 35.6
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 5.3e-33 146.0 311 38.3
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 6.9e-33 145.6 233 41.2
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.2e-32 144.8 267 38.6
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.2e-32 144.8 186 45.2
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.0e-32 144.1 279 37.3
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 5.8e-32 142.5 325 32.6
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 5.8e-32 142.5 280 37.1
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 4.9e-31 139.4 255 38.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 8.4e-31 138.7 147 57.1
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.1e-30 138.3 318 35.5
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.9e-30 137.5 311 36.3
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 3.2e-30 136.7 293 34.5
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.1e-30 135.6 188 44.1
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.1e-30 135.6 317 35.0
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 1.2e-29 134.8 298 38.6
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-29 134.4 351 33.6
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 3.0e-28 130.2 225 37.3
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 6.7e-28 129.0 242 38.4
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.5e-27 127.1 300 37.0
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.3e-27 126.7 310 32.9
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.4e-25 121.3 178 45.5
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.8e-25 120.9 234 37.6
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.8e-25 120.9 212 37.7
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.9e-23 113.6 175 44.0
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 3.8e-23 113.2 308 29.2
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 8.4e-23 112.1 315 33.0
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 3.2e-22 110.2 293 32.4
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.7e-21 107.1 180 41.7
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.5e-21 106.7 147 47.6
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 3.5e-21 106.7 73 80.8
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.6e-21 106.3 295 33.2
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.4e-17 94.7 178 38.8
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.8e-17 94.4 178 38.8
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 3.8e-15 86.7 232 31.9
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 6.1e-13 79.3 64 57.8
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 4.3e-11 73.2 248 30.2
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 9.7e-11 72.0 108 41.7
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 8.2e-10 68.9 104 40.4
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.5e-07 59.3 50 56.0
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 8.5e-07 58.9 91 42.9
SEGI_28730 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 1.1e-06 58.5 205 28.8
SEGI_39984 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 1.1e-06 58.5 110 34.5
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.4e-06 58.2 101 39.6
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.9e-06 57.8 95 35.8
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 1.9e-06 57.8 95 35.8
Glyma.05G235500 Glycine max HOM05D002346 ORTHO05D002452 2.5e-06 57.4 129 31.8
AagrBONN_evm.TU.Sc2ySwM_368.2073 Anthoceros agrestis HOM05D002346 ORTHO05D038404 3.2e-06 57.0 175 30.3
arahy.Tifrunner.gnm1.ann1.CDP1KS Arachis hypogaea HOM05D002346 ORTHO05D002452 9.4e-06 55.5 101 37.6
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 9.4e-06 55.5 36 72.2


User provided reference genes

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