Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.6e-158 562.0 282 100.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-111 407.1 312 73.1
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-111 407.1 312 73.1
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.1e-111 407.1 312 73.1
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.1e-111 405.2 280 79.3
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-111 404.8 312 72.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-111 404.8 312 72.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-111 404.8 312 72.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-110 402.9 312 72.4
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 5.9e-110 401.4 312 72.4
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 6.5e-109 397.9 312 71.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.4e-108 396.7 312 71.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.9e-108 396.4 312 71.8
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.9e-108 396.4 312 71.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.9e-108 396.4 312 71.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.9e-108 396.4 312 71.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.9e-108 396.4 312 71.8
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-108 396.0 312 71.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 5.5e-108 394.8 288 76.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.6e-107 393.3 312 71.2
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 3.6e-107 392.1 312 71.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 6.7e-106 387.9 312 70.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 8.8e-106 387.5 312 70.5
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.5e-105 386.7 312 70.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.5e-105 386.7 312 70.5
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-105 386.0 312 70.2
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-105 386.0 312 70.2
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-105 386.0 312 70.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.6e-105 386.0 312 70.5
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.3e-105 385.6 309 70.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-103 380.6 308 70.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.4e-103 379.4 297 72.4
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 8.5e-93 344.4 284 69.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.0e-90 335.9 307 63.5
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 7.5e-89 331.3 314 64.3
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.5e-89 331.3 270 70.0
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.3e-88 327.8 309 63.1
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 7.7e-86 321.2 251 72.1
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.8e-85 318.9 249 72.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 6.8e-82 308.1 312 61.9
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.8e-80 302.8 286 65.7
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.9e-77 292.7 303 59.4
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.8e-71 273.5 278 60.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 9.5e-68 261.2 295 55.6
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-66 256.9 212 67.0
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 5.8e-65 251.9 212 67.5
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.3e-60 235.7 216 65.3
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.8e-58 230.3 146 82.9
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 4.4e-57 225.7 146 80.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.1e-55 221.1 145 80.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.4e-55 220.7 278 48.6
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.1e-54 216.9 176 69.9
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.0e-53 214.5 145 80.0
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.9e-52 210.3 146 77.4
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.9e-52 210.3 146 77.4
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.6e-51 207.2 240 55.0
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 8.9e-50 201.4 262 53.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-49 200.7 393 39.7
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 6.6e-45 185.3 132 77.3
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.1e-44 184.5 130 77.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 2.1e-43 180.3 130 76.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.1e-43 180.3 130 76.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 2.8e-43 179.9 111 84.7
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-42 177.9 134 68.7
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 1.8e-42 177.2 111 83.8
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-41 174.5 193 57.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.4e-41 172.6 111 82.9
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 5.8e-41 172.2 125 74.4
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 7.6e-41 171.8 134 72.4
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.9e-40 169.1 111 81.1
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 3.5e-38 162.9 120 74.2
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.6e-38 162.5 121 75.2
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 3.9e-37 159.5 302 42.4
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.5e-36 157.5 109 79.8
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.9e-36 157.1 120 73.3
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.6e-36 155.6 109 74.3
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.6e-36 155.6 210 50.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 2.4e-34 150.2 103 74.8
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-31 140.2 92 80.4
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 9.3e-31 138.3 229 36.7
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.6e-30 137.5 92 79.3
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 6.0e-30 135.6 96 74.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-29 134.4 100 69.0
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 6.2e-27 125.6 93 74.2
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 6.9e-26 122.1 124 58.1
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.5e-25 120.9 159 49.7
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 3.4e-25 119.8 89 73.0
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.3e-24 117.9 87 74.7
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 4.9e-24 115.9 88 73.9
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 6.4e-24 115.5 89 73.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.1e-23 114.8 90 72.2
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-23 114.4 175 45.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 3.2e-23 113.2 110 62.7
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.2e-22 111.3 62 88.7
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 4.8e-19 99.4 156 44.9
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.3e-18 95.9 146 52.1
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.0e-17 94.0 61 82.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 3.4e-17 93.2 54 85.2
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.7e-16 90.9 171 39.8
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 3.8e-16 89.7 192 36.5
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.9e-15 87.4 52 82.7
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-13 79.3 69 65.2
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.7e-13 79.0 40 95.0
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.7e-13 79.0 40 95.0
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.7e-13 79.0 40 95.0
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 6.7e-13 79.0 40 95.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 6.7e-13 79.0 40 95.0
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 1.1e-12 78.2 65 69.2
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-12 78.2 50 76.0
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.5e-12 77.0 106 52.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-11 74.3 39 92.3
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 1.6e-11 74.3 40 82.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.1e-11 73.9 72 55.6
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.8e-11 72.8 71 56.3
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 6.9e-10 68.9 127 40.9
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-09 66.6 42 76.2
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 4.5e-09 66.2 56 62.5
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 3.8e-08 63.2 167 31.1
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 6.5e-08 62.4 47 72.3
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.1e-07 61.6 46 71.7
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.2e-07 58.9 39 74.4


User provided reference genes

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