Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.1e-280 969.5 571 100.0
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.3e-225 786.6 627 77.5
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 4.5e-157 558.9 622 58.5
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 2.2e-156 556.6 626 58.9
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 8.4e-156 554.7 620 59.0
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.3e-152 542.3 495 64.8
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 1.4e-147 527.3 431 71.9
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.4e-65 255.0 430 44.0
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.6e-60 236.1 340 47.4
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 3.6e-58 230.3 428 42.8
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 3.3e-51 207.2 317 41.0
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 3.6e-50 203.8 439 34.2
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 2.4e-49 201.1 401 39.2
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.1e-49 200.7 380 39.2
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 2.0e-48 198.0 324 39.5
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-47 195.3 449 37.6
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.2e-47 194.5 446 33.4
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.2e-47 194.5 446 33.4
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-46 191.8 368 39.1
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 4.2e-46 190.3 278 41.4
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 5.4e-46 189.9 449 37.2
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 5.4e-46 189.9 373 37.3
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.5e-45 187.2 361 38.8
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 3.5e-45 187.2 362 36.5
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.0e-45 186.4 364 38.2
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.0e-45 186.4 364 39.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 6.0e-45 186.4 362 37.0
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.0e-44 185.7 366 37.2
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.0e-44 185.7 465 34.4
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.3e-44 184.5 360 38.1
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 3.0e-44 184.1 396 35.1
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 5.1e-44 183.3 332 38.6
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.6e-44 183.0 358 38.8
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 6.6e-44 183.0 392 34.7
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.1e-43 182.2 418 37.1
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 1.9e-43 181.4 630 30.5
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 9.6e-43 179.1 406 36.2
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.6e-42 178.3 420 36.2
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 2.1e-42 177.9 362 36.2
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 3.4e-40 170.6 360 37.2
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 7.6e-40 169.5 302 39.7
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 1.3e-39 168.7 320 39.1
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 3.8e-39 167.2 306 38.9
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 4.9e-39 166.8 332 36.7
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 6.4e-39 166.4 466 31.1
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.4e-38 165.2 278 41.0
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 9.3e-38 162.5 493 32.5
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 4.6e-37 160.2 289 36.7
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.8e-36 158.3 348 35.1
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.3e-36 157.9 438 31.3
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 3.9e-36 157.1 293 40.6
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 3.9e-36 157.1 275 38.5
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 1.5e-35 155.2 314 36.0
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 4.8e-34 150.2 439 37.6
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 9.0e-33 146.0 397 31.7
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.5e-32 145.2 282 39.4
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 3.4e-32 144.1 284 39.8
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 6.5e-31 139.8 332 32.5
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 8.4e-31 139.4 426 29.1
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 7.1e-30 136.3 340 34.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 2.1e-29 134.8 435 31.0
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 6.0e-29 133.3 293 35.2
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 6.0e-29 133.3 278 38.1
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 5.1e-28 130.2 256 35.9
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 6.7e-28 129.8 294 36.7
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 8.7e-28 129.4 376 30.6
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.1e-27 129.0 371 30.7
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.3e-27 127.5 293 33.1
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 3.3e-27 127.5 400 30.5
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 5.7e-27 126.7 332 30.7
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 7.4e-27 126.3 262 34.7
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 9.6e-27 125.9 332 31.6
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-26 125.6 276 35.1
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.6e-26 125.2 263 41.1
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 3.7e-26 124.0 310 33.5
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 3.7e-26 124.0 241 34.9
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.1e-25 122.5 335 30.7
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 2.4e-25 121.3 372 29.8
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.3e-25 120.2 314 33.4
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.2e-24 119.0 312 33.7
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 3.4e-24 117.5 407 28.5
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.5e-24 117.1 323 32.5
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 1.0e-23 115.9 294 31.6
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.2e-23 114.8 265 36.2
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.9e-23 114.4 274 32.1
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-22 112.5 291 30.6
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.4e-22 112.1 434 28.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 1.6e-21 108.6 216 38.4
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 1.6e-21 108.6 216 38.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 6.1e-21 106.7 320 30.3
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 5.1e-20 103.6 301 29.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.8e-18 97.8 202 40.6
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 3.7e-18 97.4 479 26.5
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-17 95.9 221 31.7
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.1e-17 95.9 398 27.6
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.8e-17 95.1 322 29.2
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 7.7e-16 89.7 226 31.0
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.3e-15 89.0 308 26.3
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 2.2e-15 88.2 215 30.7
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 2.2e-15 88.2 323 27.9
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.0e-15 87.0 316 27.5
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.5e-15 86.7 316 26.9
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-14 85.5 308 26.3
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 9.4e-14 82.8 231 28.1
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.4e-12 79.0 221 29.9
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 3.0e-12 77.8 271 28.8
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 4.4e-11 73.9 105 42.9
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 7.4e-11 73.2 121 42.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 7.4e-11 73.2 317 27.1
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 9.7e-11 72.8 112 35.7
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 2.2e-10 71.6 224 29.0
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 8.2e-10 69.7 268 24.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.1e-09 69.3 188 29.8
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 1.1e-09 69.3 219 28.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.4e-09 68.9 296 26.4
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 4.1e-09 67.4 187 28.9
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 5.3e-09 67.0 202 29.7
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 6.9e-09 66.6 310 27.4
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 6.9e-09 66.6 200 30.5
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.9e-09 66.6 187 30.5
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.2e-08 65.9 94 39.4
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.5e-08 65.5 199 26.1
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.5e-08 65.5 298 24.5
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 2.0e-08 65.1 82 39.0
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.6e-08 64.7 187 29.4
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 2.6e-08 64.7 201 27.4
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 2.6e-08 64.7 198 29.8
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.6e-08 64.7 187 29.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.4e-08 64.3 217 29.5
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 3.4e-08 64.3 228 24.6
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 4.5e-08 63.9 198 28.3
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 4.5e-08 63.9 197 24.4
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 5.9e-08 63.5 187 25.7
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 5.9e-08 63.5 189 29.1
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 5.9e-08 63.5 201 28.9
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.9e-08 63.5 211 26.1
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 7.7e-08 63.2 206 29.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 7.7e-08 63.2 187 30.5
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 7.7e-08 63.2 185 24.9
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 1.0e-07 62.8 82 37.8
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.3e-07 62.4 186 31.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-07 62.4 182 29.7
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.7e-07 62.0 209 29.2
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 1.7e-07 62.0 209 24.9
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.2e-07 61.6 187 26.2
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.2e-07 61.6 198 27.8
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.2e-07 61.6 181 30.9
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.2e-07 61.6 194 29.4
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.9e-07 61.2 197 26.4
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 3.8e-07 60.8 209 25.8
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 3.8e-07 60.8 209 25.4
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 6.5e-07 60.1 215 24.7
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 8.5e-07 59.7 251 23.9
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 8.5e-07 59.7 181 25.4
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 8.5e-07 59.7 191 24.6
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 8.5e-07 59.7 186 27.4
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 1.1e-06 59.3 190 30.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 1.4e-06 58.9 198 27.8
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.9e-06 58.5 233 23.6
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.9e-06 58.5 187 25.7
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.5e-06 58.2 251 27.5
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 2.5e-06 58.2 205 22.9
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 2.5e-06 58.2 217 28.6
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 3.2e-06 57.8 209 26.3
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.2e-06 57.4 192 24.0
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.5e-06 57.0 187 26.2
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 5.5e-06 57.0 187 27.3
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 5.5e-06 57.0 196 29.1
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 5.5e-06 57.0 187 23.0
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 7.2e-06 56.6 197 23.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 7.2e-06 56.6 194 24.2
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 7.2e-06 56.6 187 23.0
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 9.4e-06 56.2 187 28.3
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 9.4e-06 56.2 232 28.4


User provided reference genes

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