Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.1e-155 552.4 287 100.0
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.8e-149 531.6 291 96.2
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 6.4e-120 434.5 289 82.0
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.9e-117 425.2 294 79.3
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.6e-116 421.4 300 78.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.6e-115 419.9 289 78.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.8e-115 419.1 292 79.1
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.9e-112 409.1 292 78.1
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.7e-104 383.3 275 74.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.4e-103 379.4 293 70.3
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 7.3e-100 367.9 297 69.7
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.3e-96 357.1 297 68.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.9e-96 355.9 225 83.1
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.1e-95 354.0 247 76.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.2e-94 350.5 228 79.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.6e-94 350.1 228 81.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.7e-94 349.4 233 78.1
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.7e-94 349.4 229 80.3
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.3e-93 346.3 225 80.4
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.0e-93 345.9 225 80.4
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 8.7e-93 344.4 243 76.5
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.5e-92 343.6 226 78.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.5e-92 342.8 228 78.5
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 3.3e-92 342.4 225 80.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.3e-92 342.0 237 75.5
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 9.6e-92 340.9 234 77.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.1e-91 339.7 225 78.7
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 4.8e-91 338.6 229 76.4
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.8e-91 338.6 228 76.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 6.2e-91 338.2 225 77.8
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 8.1e-91 337.8 230 78.3
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-90 337.0 225 77.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-90 336.7 225 77.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.8e-90 336.7 212 82.5
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.4e-90 336.3 227 77.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.4e-90 336.3 272 68.8
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.1e-90 335.9 225 77.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 3.1e-90 335.9 228 75.9
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 5.3e-90 335.1 245 73.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.3e-90 335.1 238 74.4
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 5.3e-90 335.1 225 77.8
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.9e-90 334.7 240 75.4
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.2e-89 334.0 228 75.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.0e-89 333.2 231 75.8
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.6e-89 332.8 222 77.9
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.6e-89 332.8 219 79.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.4e-89 332.4 220 78.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.5e-89 332.0 227 78.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 5.8e-89 331.6 228 75.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 5.8e-89 331.6 225 76.9
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 7.6e-89 331.3 212 80.7
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 7.6e-89 331.3 228 75.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 9.9e-89 330.9 228 75.9
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.9e-89 330.9 231 74.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.3e-88 330.5 222 77.5
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-88 330.5 225 76.4
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.2e-88 329.7 227 75.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.2e-88 329.7 227 75.3
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.2e-88 329.7 233 74.7
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.2e-88 329.7 229 76.4
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 2.2e-88 329.7 226 74.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.2e-88 329.7 253 71.5
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.9e-88 329.3 242 70.7
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.8e-88 328.9 227 77.1
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.8e-88 328.9 227 77.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.8e-88 328.9 233 73.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 3.8e-88 328.9 228 75.0
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 4.9e-88 328.6 228 74.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.9e-88 328.6 228 74.6
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.9e-88 328.6 232 72.8
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.4e-88 328.2 244 71.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.4e-88 328.2 244 71.7
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 8.4e-88 327.8 231 74.5
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.4e-87 327.0 227 74.0
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.9e-87 326.6 231 75.3
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-87 326.6 234 74.8
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.9e-87 326.6 280 64.3
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.4e-87 326.2 235 73.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.4e-87 326.2 234 74.8
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 3.2e-87 325.9 225 75.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.2e-87 325.9 223 78.0
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 4.2e-87 325.5 239 70.3
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.4e-87 325.1 242 70.2
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 5.4e-87 325.1 271 64.9
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 7.1e-87 324.7 229 75.5
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 7.1e-87 324.7 229 75.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 7.1e-87 324.7 228 73.7
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 9.3e-87 324.3 222 75.7
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 9.3e-87 324.3 228 75.9
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.2e-86 323.9 222 75.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.2e-86 323.9 263 68.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.2e-86 323.9 240 70.8
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.6e-86 323.6 233 73.0
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.6e-86 323.6 234 74.4
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.6e-86 323.6 223 77.6
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.5e-86 322.4 238 73.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.6e-86 322.0 219 76.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.0e-86 321.6 227 72.7
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.9e-86 321.2 279 63.1
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.0e-85 320.9 221 75.6
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.3e-85 320.5 252 67.9
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-85 320.5 228 71.9
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.3e-85 320.5 219 76.7
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.3e-85 320.5 293 63.5
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-85 320.1 227 72.2
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 3.0e-85 319.3 243 68.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 5.1e-85 318.5 274 66.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.7e-85 317.8 250 70.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 4.3e-84 315.5 222 74.8
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.4e-82 310.5 288 60.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.4e-82 310.5 232 70.7
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.4e-81 305.8 227 71.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 7.1e-79 298.1 238 66.4
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.2e-78 297.4 225 68.4
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.1e-78 296.6 233 66.1
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 3.5e-78 295.8 227 68.7
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.0e-77 294.3 281 58.0
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.1e-76 290.8 255 62.7
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.3e-75 287.3 235 65.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.3e-75 287.3 218 67.4
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.1e-75 286.6 221 67.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.1e-75 286.6 226 67.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.0e-74 282.3 279 59.5
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.0e-73 280.0 293 57.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.2e-72 276.6 177 78.0
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 6.0e-70 268.5 177 80.2
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.1e-66 256.1 190 71.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 9.0e-66 254.6 217 63.1
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.3e-64 250.8 332 48.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.1e-63 247.7 183 74.3
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 7.2e-63 245.0 158 81.0
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-61 240.7 206 67.5
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.8e-61 240.4 158 81.0
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.2e-59 231.5 190 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.8e-58 230.3 185 64.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.1e-58 229.2 173 70.5
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.4e-57 226.1 160 78.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.2e-56 223.4 259 51.0
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.2e-56 223.4 259 51.0
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 6.5e-56 221.9 165 73.9
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.9e-55 220.3 178 67.4
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 3.6e-54 216.1 180 63.3
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 6.7e-53 211.8 185 60.0
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.1e-50 204.5 166 68.1
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.9e-49 198.7 187 56.1
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 6.1e-46 188.7 235 48.9
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.1e-42 176.4 152 61.8
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.6e-28 130.2 258 37.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 6.3e-27 125.6 241 35.3
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.1e-26 123.2 68 83.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.4e-21 107.8 207 35.3
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.6e-20 103.6 194 36.1
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.4e-18 97.1 235 32.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.0e-14 82.0 253 30.4
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.2e-11 73.9 41 80.5
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.2e-10 70.1 46 78.3
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.4e-10 69.3 162 35.2
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 7.0e-10 68.9 55 65.5
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.6e-09 67.8 51 68.6
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.6e-07 59.3 41 68.3
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 2.1e-06 57.4 178 28.1


User provided reference genes

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