Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.4e-177 624.8 296 100.0
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.5e-167 592.0 300 94.3
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.9e-143 512.7 268 89.2
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.9e-143 512.7 268 89.2
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 2.0e-140 502.7 270 87.4
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 2.4e-138 495.7 273 84.6
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.8e-125 453.0 270 77.8
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 3.5e-121 438.7 270 72.6
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.0e-120 437.2 270 73.0
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 3.6e-118 428.7 270 71.9
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 6.2e-118 427.9 270 70.4
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 6.2e-118 427.9 270 71.9
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 1.4e-117 426.8 270 71.5
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.3e-117 426.0 273 69.2
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 4.0e-117 425.2 285 69.1
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 5.2e-117 424.9 285 69.1
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 5.2e-117 424.9 270 70.4
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.2e-117 424.9 279 69.5
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.4e-116 422.2 279 69.2
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 7.5e-116 421.0 270 70.7
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 6.4e-115 417.9 269 71.0
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 6.4e-115 417.9 270 69.3
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.1e-114 417.2 270 68.1
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 1.1e-114 417.2 239 83.7
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 2.4e-114 416.0 270 69.3
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 9.2e-114 414.1 277 69.0
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.6e-113 413.3 270 69.6
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 2.7e-113 412.5 273 68.1
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 2.7e-113 412.5 279 65.9
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.3e-112 410.2 270 69.6
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 5.0e-112 408.3 286 66.1
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 7.3e-111 404.4 270 68.1
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 2.1e-110 402.9 270 69.3
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 3.6e-110 402.1 270 66.7
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 4.7e-110 401.7 270 67.0
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 6.2e-110 401.4 271 67.5
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.1e-109 399.1 286 64.3
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 5.2e-109 398.3 272 65.8
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.8e-109 397.9 298 62.8
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 6.8e-109 397.9 277 66.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 8.9e-109 397.5 286 64.3
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.2e-108 397.1 272 66.2
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 2.0e-108 396.4 272 64.7
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 2.6e-108 396.0 272 65.4
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.6e-108 396.0 270 67.0
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.4e-108 395.6 286 63.6
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 4.4e-108 395.2 272 65.1
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.8e-108 394.8 286 63.3
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.7e-107 393.3 243 72.8
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 2.2e-107 392.9 286 64.0
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.9e-107 392.5 272 65.8
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 2.9e-107 392.5 271 64.6
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.1e-106 390.6 270 67.8
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 2.4e-106 389.4 243 72.4
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 7.1e-106 387.9 270 64.4
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 7.1e-106 387.9 272 65.1
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 9.2e-106 387.5 271 63.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.6e-105 386.7 272 64.0
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.6e-105 386.7 272 65.1
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.1e-105 386.3 272 64.3
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.7e-105 386.0 275 64.0
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 4.6e-105 385.2 272 64.0
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.0e-105 384.8 272 64.0
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 7.8e-105 384.4 273 65.9
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.3e-104 383.6 296 60.5
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.3e-104 382.9 270 62.6
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 5.1e-104 381.7 270 63.7
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 6.6e-104 381.3 263 65.8
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 8.6e-104 380.9 272 62.9
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.5e-103 380.2 271 63.5
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 3.3e-103 379.0 277 63.5
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 4.3e-103 378.6 273 63.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 2.8e-102 375.9 254 67.3
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 3.1e-101 372.5 274 63.9
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.6e-100 369.4 273 61.2
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.7e-99 366.7 285 61.1
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.7e-99 366.7 274 60.2
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 2.2e-99 366.3 248 67.3
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 2.2e-99 366.3 274 60.6
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 1.1e-98 364.0 272 59.6
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.9e-98 363.2 268 60.4
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 9.2e-98 360.9 271 57.6
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 9.6e-95 350.9 284 57.7
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.8e-93 346.7 270 60.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.2e-90 335.9 245 61.6
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 3.3e-87 325.9 271 58.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.3e-86 323.9 268 56.7
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.9e-82 310.1 213 64.3
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.4e-82 309.7 270 55.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 6.0e-81 305.1 245 58.0
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.3e-80 303.9 245 57.6
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 8.7e-80 301.2 208 64.4
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 1.5e-79 300.4 189 72.5
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 7.4e-79 298.1 190 71.6
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 1.6e-78 297.0 270 53.3
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 5.3e-77 292.0 216 59.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 5.8e-76 288.5 190 68.9
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 7.6e-76 288.1 254 55.9
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 2.7e-73 279.6 256 53.5
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 2.7e-73 279.6 306 47.1
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 4.3e-71 272.3 247 54.3
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.4e-69 266.5 271 46.5
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 5.5e-66 255.4 310 43.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 1.2e-65 254.2 178 61.8
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.3e-62 244.2 270 44.1
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 3.7e-62 242.7 281 44.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 1.5e-60 237.3 190 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 3.4e-60 236.1 249 44.6
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.0e-59 234.6 190 60.0
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.9e-56 222.6 276 40.6
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 8.2e-54 214.9 207 53.6
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.8e-53 213.8 278 39.6
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.6e-52 209.9 192 52.6
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 4.2e-50 202.6 317 33.1
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 5.5e-50 202.2 129 72.1
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 5.5e-50 202.2 309 33.3
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.0e-48 198.0 160 59.4
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.9e-48 196.1 155 60.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.5e-47 194.1 117 74.4
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 2.2e-46 190.3 274 36.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.7e-46 189.5 273 37.4
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 4.1e-45 186.0 135 64.4
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 2.2e-43 180.3 176 50.6
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 4.7e-41 172.6 222 41.4
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 7.9e-41 171.8 169 55.0
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.2e-40 169.1 253 36.4
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.1e-39 167.9 119 60.5
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 6.3e-38 162.2 119 61.3
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 2.0e-36 157.1 123 56.1
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 5.5e-34 149.1 119 52.9
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.2e-33 147.9 106 64.2
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.4e-23 112.8 80 61.2
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 1.7e-22 110.9 110 49.1
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 2.4e-21 107.1 74 66.2
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.1e-21 106.7 82 58.5
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-19 101.7 63 68.3
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.3e-19 101.3 64 67.2
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 1.1e-18 98.2 73 64.4
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 2.0e-15 87.4 65 63.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 3.4e-15 86.7 60 66.7
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.4e-15 86.7 61 63.9
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.2e-14 84.0 50 66.0
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 9.2e-13 78.6 112 37.5
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.3e-11 74.7 73 53.4
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 3.6e-09 66.6 76 42.1
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 8.9e-08 62.0 51 51.0
Lj1g0015259 Lotus japonicus HOM05D000590 ORTHO05D006825 2.9e-06 57.0 36 66.7
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 6.4e-06 55.8 44 54.5


User provided reference genes

Program Settings