Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.0e-102 374.4 221 100.0
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.2e-26 122.9 105 66.7
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.5e-23 113.2 105 60.0
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.1e-22 110.2 72 73.6
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.8e-21 107.1 110 56.4
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 6.2e-14 82.0 75 58.7
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.8e-13 80.5 43 86.0
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 5.2e-13 79.0 104 45.2
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.2e-13 79.0 43 83.7
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 6.8e-13 78.6 43 81.4
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 6.8e-13 78.6 43 81.4
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 8.9e-13 78.2 43 83.7
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 8.9e-13 78.2 43 81.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.2e-12 77.8 104 45.2
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.2e-12 77.8 43 81.4
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.2e-12 77.8 43 81.4
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.5e-12 77.4 43 79.1
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 1.5e-12 77.4 42 81.0
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.5e-12 77.4 43 81.4
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.0e-12 77.0 43 76.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.0e-12 77.0 43 79.1
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 2.0e-12 77.0 43 81.4
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 2.6e-12 76.6 43 79.1
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.6e-12 76.6 43 79.1
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.6e-12 76.6 43 79.1
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.6e-12 76.6 43 79.1
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 2.6e-12 76.6 43 79.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 3.4e-12 76.3 43 81.4
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 3.4e-12 76.3 43 76.7
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 4.4e-12 75.9 43 81.4
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 4.4e-12 75.9 43 81.4
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 4.4e-12 75.9 43 79.1
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 81.4
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 76.7
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 5.8e-12 75.5 43 79.1
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 76.7
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 76.7
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 76.7
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 76.7
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 79.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 76.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 7.6e-12 75.1 43 79.1
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 9.9e-12 74.7 43 79.1
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 9.9e-12 74.7 39 84.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.3e-11 74.3 43 76.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-11 74.3 89 48.3
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.7e-11 73.9 42 78.6
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.7e-11 73.9 43 76.7
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.7e-11 73.9 42 78.6
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.7e-11 73.9 43 79.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.7e-11 73.9 43 79.1
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.7e-11 73.9 43 76.7
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 2.2e-11 73.6 42 76.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 2.2e-11 73.6 43 74.4
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.2e-11 73.6 42 78.6
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.2e-11 73.6 43 79.1
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.2e-11 73.6 43 74.4
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.2e-11 73.6 42 78.6
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.9e-11 73.2 43 76.7
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.9e-11 73.2 43 76.7
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.9e-11 73.2 43 76.7
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-11 73.2 42 76.2
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 2.9e-11 73.2 43 79.1
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.9e-11 73.2 43 76.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 3.8e-11 72.8 43 74.4
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.8e-11 72.8 43 76.7
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 79.1
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.9e-11 72.4 42 78.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 76.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 72.1
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 76.7
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 76.7
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 76.7
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 72.1
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 4.9e-11 72.4 43 76.7
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.4e-11 71.6 42 73.8
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.4e-11 71.6 43 72.1
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 8.4e-11 71.6 43 74.4
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.1e-10 71.2 43 74.4
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.1e-10 71.2 42 73.8
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.1e-10 71.2 43 76.7
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.4e-10 70.9 39 82.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.9e-10 70.5 43 72.1
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.9e-10 70.5 43 72.1
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.9e-10 70.5 38 76.3
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.4e-10 70.1 43 76.7
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.4e-10 70.1 43 74.4
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.4e-10 70.1 43 74.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 2.4e-10 70.1 43 69.8
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.2e-10 69.7 43 74.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.2e-10 69.7 43 69.8
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-10 69.7 45 71.1
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 3.2e-10 69.7 43 72.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 4.1e-10 69.3 43 67.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 4.1e-10 69.3 43 74.4
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.4e-10 68.9 43 74.4
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.4e-10 68.9 43 72.1
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.1e-10 68.6 140 35.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 7.1e-10 68.6 43 69.8
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 7.1e-10 68.6 39 79.5
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 9.2e-10 68.2 38 78.9
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 9.2e-10 68.2 43 74.4
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.2e-09 67.8 43 65.1
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.1e-09 67.0 45 71.1
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.7e-09 66.6 43 65.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 3.5e-09 66.2 44 70.5
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.6e-09 65.9 44 70.5
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 7.8e-09 65.1 43 62.8
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 7.8e-09 65.1 37 75.7
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.8e-09 65.1 45 71.1
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 7.8e-09 65.1 43 72.1
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 7.8e-09 65.1 61 57.4
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.3e-08 64.3 43 69.8
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.7e-08 63.9 43 69.8
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.7e-08 63.9 38 73.7
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-08 63.9 43 67.4
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.0e-08 63.2 43 65.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.0e-08 63.2 37 75.7
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 5.1e-08 62.4 43 65.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 6.6e-08 62.0 39 64.1
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.1e-07 61.2 43 62.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.5e-07 60.8 34 76.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-07 60.5 68 51.5
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 7.3e-07 58.5 31 80.6
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 9.6e-07 58.2 139 33.8
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.6e-06 57.4 43 62.8
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.8e-06 56.6 72 43.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 3.6e-06 56.2 38 63.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 8.1e-06 55.1 31 74.2
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 8.1e-06 55.1 38 60.5


User provided reference genes

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