Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.3e-207 725.3 370 100.0
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.2e-132 475.3 296 84.1
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.0e-125 454.1 322 75.2
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.0e-125 454.1 322 75.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.3e-122 443.0 322 73.3
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.2e-116 421.4 299 75.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 9.1e-111 404.4 312 70.8
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.3e-104 384.0 298 68.8
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 4.8e-104 382.1 290 69.7
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.3e-104 381.7 327 63.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.4e-103 380.6 338 63.3
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.1e-103 379.4 312 65.1
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.1e-103 379.4 290 69.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 4.1e-103 379.0 323 63.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.2e-102 377.5 323 63.2
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 2.0e-102 376.7 327 62.4
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.0e-102 376.7 288 68.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 3.5e-102 375.9 327 62.7
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.5e-102 375.6 288 69.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 7.7e-102 374.8 314 65.0
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.0e-101 374.4 290 67.9
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.3e-101 374.0 358 60.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.7e-101 373.6 290 67.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.7e-101 373.6 288 69.1
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.9e-101 372.9 288 68.8
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 5.0e-101 372.1 325 63.1
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.5e-100 370.5 320 63.4
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.5e-100 370.5 311 63.3
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.5e-100 370.5 291 68.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.9e-100 370.2 327 61.5
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.9e-100 370.2 318 63.2
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.5e-100 369.8 288 67.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.2e-100 369.0 430 53.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 5.5e-100 368.6 318 62.3
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.2e-100 368.2 288 67.4
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 7.2e-100 368.2 326 62.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 9.4e-100 367.9 316 62.7
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.6e-99 367.1 319 61.8
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.6e-99 367.1 323 62.2
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.6e-99 367.1 323 61.6
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.6e-99 365.9 320 62.8
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 4.7e-99 365.5 323 61.0
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 8.0e-99 364.8 315 62.5
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.0e-98 364.4 288 67.7
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.2e-97 360.9 333 60.4
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.3e-96 357.5 322 60.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.9e-96 355.5 326 60.1
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 8.3e-96 354.8 291 63.9
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.4e-95 354.0 291 64.6
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.4e-95 354.0 305 63.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.8e-95 353.6 291 64.3
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.8e-95 353.6 266 71.8
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.4e-95 353.2 291 63.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.4e-95 353.2 291 63.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 2.4e-95 353.2 362 55.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.1e-95 351.3 323 60.7
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.2e-94 350.9 323 58.8
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-94 350.1 325 59.4
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.7e-94 349.7 323 58.2
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.5e-94 349.4 368 57.9
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.5e-94 349.4 323 58.8
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.5e-94 349.4 288 63.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.3e-93 346.7 343 57.1
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 2.3e-93 346.7 273 68.1
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-92 344.0 285 65.6
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-92 344.0 285 65.6
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.9e-92 343.6 323 57.9
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.9e-92 343.6 323 57.9
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.9e-92 343.6 289 64.4
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.5e-92 343.2 324 58.6
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 5.6e-92 342.0 291 62.9
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 5.6e-92 342.0 291 62.9
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 6.8e-90 335.1 323 57.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.3e-88 330.9 289 62.6
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 6.4e-88 328.6 249 71.5
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 6.4e-88 328.6 289 59.5
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 2.0e-86 323.6 285 61.4
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 7.8e-86 321.6 323 54.8
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 7.8e-86 321.6 323 54.8
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.9e-85 319.7 325 55.1
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.6e-85 318.5 325 57.2
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.3e-84 316.2 274 62.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.0e-82 309.3 338 52.1
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 4.0e-82 309.3 273 60.4
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.4e-81 305.8 299 58.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 9.8e-81 304.7 323 55.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-79 300.8 313 54.0
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-79 300.8 313 54.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 4.6e-78 295.8 228 70.2
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 4.6e-78 295.8 309 54.0
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.0e-77 294.7 291 55.3
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.8e-75 286.6 194 78.4
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.0e-74 282.7 297 54.5
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 4.0e-74 282.7 233 65.2
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 6.8e-74 282.0 297 54.2
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 6.8e-74 282.0 327 52.0
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.0e-73 280.4 288 53.5
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.6e-73 280.0 228 66.2
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.9e-72 275.8 321 50.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.2e-71 273.1 260 61.2
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 7.8e-70 268.5 283 57.2
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.1e-69 265.8 316 50.6
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 4.3e-68 262.7 333 47.4
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.0e-66 256.1 194 72.2
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 8.9e-66 255.0 196 68.4
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 8.4e-64 248.4 284 52.5
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.0e-61 241.5 199 63.8
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.8e-59 233.4 194 64.9
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 5.8e-57 225.7 237 54.0
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.7e-56 224.2 209 60.8
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.1e-52 211.5 206 58.7
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 4.3e-52 209.5 283 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.8e-50 204.1 288 44.4
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 5.3e-50 202.6 291 42.6
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.0e-50 201.8 171 62.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.1e-47 194.9 302 40.1
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.5e-41 172.9 160 57.5
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 4.6e-38 162.9 174 54.6
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 4.8e-35 152.9 145 56.6
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.5e-31 139.4 88 73.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.3e-31 138.7 77 90.9
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.3e-29 134.8 288 36.1
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-29 134.4 120 60.0
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.5e-28 130.6 104 64.4
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 4.3e-28 129.8 106 67.9
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 3.7e-27 126.7 66 92.4
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 4.8e-27 126.3 292 33.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 6.9e-26 122.5 81 77.8
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.0e-21 107.1 82 70.7
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.7e-21 105.9 85 57.6
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.9e-20 104.4 78 56.4
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.3e-19 101.7 111 55.0
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 3.1e-18 97.1 71 70.4
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.1e-18 96.7 77 59.7
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.2e-17 95.1 214 35.0
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.8e-13 81.3 259 27.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.0e-13 80.5 134 37.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.0e-13 80.5 134 37.3
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.6e-09 67.4 44 79.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.6e-09 67.4 44 79.5


User provided reference genes

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