Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.6e-264 913.7 450 100.0
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.0e-241 839.7 481 89.2
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.0e-236 823.2 481 86.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 6.7e-233 810.4 480 85.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 8.7e-233 810.1 480 85.4
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.5e-232 809.3 480 85.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.3e-228 796.2 481 84.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.4e-203 710.3 482 73.9
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.4e-198 696.4 473 74.4
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.7e-197 692.2 485 71.8
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-196 689.1 473 71.2
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.8e-196 688.3 470 72.1
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 6.5e-196 687.6 472 71.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.5e-195 685.6 473 71.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 3.3e-195 685.3 483 70.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.6e-194 682.9 479 72.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.6e-194 681.8 473 70.2
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.2e-192 676.8 472 70.8
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.2e-192 676.8 469 72.9
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.4e-192 675.2 470 71.3
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.7e-191 672.9 482 69.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 8.3e-191 670.6 483 68.9
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.1e-190 670.2 468 71.2
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.1e-190 670.2 469 70.4
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.8e-190 669.5 471 70.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.4e-190 669.1 470 72.1
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 7.0e-190 667.5 470 70.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.2e-189 666.8 463 72.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.0e-189 666.0 476 69.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.3e-188 663.3 555 63.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.3e-188 663.3 473 69.8
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.3e-188 663.3 482 69.3
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 6.6e-188 661.0 473 69.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.9e-187 659.4 482 68.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 4.3e-187 658.3 470 70.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.3e-187 658.3 472 69.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.3e-187 657.5 472 69.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 6.1e-186 654.4 472 68.9
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.0e-186 654.1 472 68.6
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.4e-185 653.3 470 69.6
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-185 653.3 472 68.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.4e-185 653.3 469 69.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.8e-185 652.9 474 69.2
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.0e-185 652.1 472 68.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 3.0e-185 652.1 470 69.6
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.0e-185 652.1 483 67.5
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.0e-185 651.7 449 71.7
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 6.8e-185 651.0 480 69.2
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 8.9e-185 650.6 473 68.9
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 8.9e-185 650.6 480 68.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.2e-184 650.2 483 68.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 5.8e-184 647.9 469 68.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-183 646.7 472 68.4
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.7e-183 646.4 441 71.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.9e-183 645.6 472 68.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.4e-182 642.5 472 66.9
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.4e-182 642.5 483 67.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.1e-182 641.7 472 67.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.1e-182 641.7 474 67.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.7e-180 636.3 475 66.1
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.6e-180 634.4 468 67.7
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-179 632.5 472 67.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.1e-178 629.4 472 66.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.8e-178 629.0 445 69.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.1e-177 627.1 475 67.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 5.2e-177 624.8 448 69.4
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 8.9e-177 624.0 450 68.2
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 5.8e-176 621.3 434 72.1
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.4e-174 616.7 465 66.0
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.7e-173 612.5 438 70.3
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 3.5e-173 612.1 447 69.1
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.0e-172 609.0 471 66.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.1e-171 607.1 472 65.7
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.5e-171 606.7 476 65.1
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 2.5e-171 605.9 468 65.0
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-168 597.0 472 64.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.5e-168 596.7 473 65.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.9e-167 591.7 430 68.1
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 8.3e-167 590.9 473 64.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.1e-166 588.6 468 65.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 4.1e-166 588.6 483 64.4
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 9.2e-166 587.4 468 64.3
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.0e-164 583.9 470 64.3
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.7e-164 583.2 470 64.0
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.3e-164 582.8 468 63.9
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.9e-164 582.0 518 61.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.6e-163 578.2 469 64.2
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.8e-162 575.9 468 63.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.6e-162 575.5 497 60.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 8.1e-162 574.3 467 63.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 8.1e-162 574.3 471 63.7
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 8.1e-162 574.3 470 63.0
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.4e-161 573.5 470 63.8
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.8e-161 573.2 470 63.0
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.4e-161 572.8 470 63.2
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.4e-161 572.8 470 63.2
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.1e-161 572.4 518 56.6
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 8.9e-161 570.9 470 63.6
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.6e-160 567.8 469 62.5
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.9e-159 565.8 466 62.7
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 3.8e-159 565.5 469 61.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.1e-158 563.9 414 66.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.2e-152 543.9 416 65.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.8e-152 541.6 446 63.5
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.2e-151 539.7 442 63.3
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.9e-151 538.5 474 62.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.3e-147 525.8 418 65.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 4.2e-142 508.8 368 68.8
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-141 506.5 448 60.7
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.5e-141 505.8 480 58.8
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 6.0e-141 505.0 513 53.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.8e-140 503.4 480 55.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-138 497.3 355 68.5
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.9e-135 486.1 492 52.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.3e-132 476.5 461 57.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 8.7e-132 474.6 470 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.5e-128 462.2 447 53.7
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.2e-126 456.1 363 63.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.9e-116 422.5 437 52.4
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.3e-114 417.5 548 42.9
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.4e-100 370.9 232 72.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.7e-93 346.7 317 60.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.6e-88 330.9 310 54.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.8e-84 315.1 211 74.4
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 9.8e-83 311.6 478 41.0
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.2e-76 289.3 201 70.1
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 9.8e-75 285.0 382 41.6
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.4e-73 280.4 207 66.2
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.6e-71 272.3 275 57.8
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.2e-69 268.1 428 40.9
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.4e-67 260.0 188 62.8
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.9e-66 256.1 474 34.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.9e-62 244.2 431 37.6
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-52 211.1 262 47.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 8.9e-52 208.8 499 31.9
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-51 207.6 253 50.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-51 207.6 111 84.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-50 204.1 111 82.9
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.9e-50 203.0 111 83.8
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.3e-46 190.3 179 57.5
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.6e-43 179.1 135 65.9
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.2e-41 173.3 111 73.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.1e-40 171.0 203 49.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.5e-38 164.9 105 74.3
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.6e-35 154.1 118 65.3
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 4.4e-35 153.3 186 50.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.2e-34 151.0 178 50.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.9e-34 150.6 289 35.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.7e-31 141.4 116 59.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-27 128.3 67 89.6
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 6.4e-26 122.9 136 51.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 9.3e-25 119.0 104 61.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.7e-21 107.1 125 49.6
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 5.8e-19 99.8 119 47.9
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.9e-18 97.4 64 70.3
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 6.9e-12 76.3 49 73.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.9e-09 68.2 45 71.1
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.5e-09 67.8 42 76.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 4.2e-09 67.0 55 60.0
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 2.3e-07 61.2 46 54.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.0e-07 60.8 44 70.5
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.9e-07 60.5 44 70.5


User provided reference genes

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