Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.1e-75 286.6 142 100.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.8e-51 206.1 161 73.3
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 5.0e-33 144.8 151 58.9
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 3.2e-32 142.1 156 57.1
Sopen10g029100 Solanum pennellii HOM05D015198 ORTHO05D002992 2.0e-21 106.3 122 54.9
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.3e-20 100.9 146 47.3
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 9.1e-19 97.4 147 46.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.5e-18 95.5 145 45.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.7e-18 94.4 144 43.8
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.7e-17 93.2 124 50.8
CAN.G960.58 Capsicum annuum HOM05D015198 ORTHO05D002992 2.9e-17 92.4 116 54.3
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.6e-15 85.5 138 37.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.0e-14 84.0 151 39.7
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.0e-14 84.0 152 40.8
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.8e-14 83.2 145 39.3
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.2e-13 80.5 147 39.5
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 7.5e-13 77.8 155 32.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.3e-12 77.0 138 36.2
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.7e-12 76.6 128 35.9
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.2e-12 76.3 151 37.1
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.7e-12 75.5 133 36.1
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 4.9e-12 75.1 144 34.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 4.9e-12 75.1 149 35.6
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 6.3e-12 74.7 140 37.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.3e-12 74.3 145 37.9
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.1e-11 73.9 135 33.3
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.4e-11 73.6 136 36.8
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.4e-11 72.8 145 38.6
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 3.1e-11 72.4 151 33.8
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.4e-11 71.6 138 37.7
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.4e-11 71.6 148 33.8
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 5.4e-11 71.6 139 34.5
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.6e-10 70.1 145 33.1
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.7e-10 69.3 45 73.3
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 2.7e-10 69.3 128 39.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 5.9e-10 68.2 153 35.3
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 5.9e-10 68.2 143 29.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 7.8e-10 67.8 145 29.7
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.3e-09 67.0 145 31.7
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.9e-09 65.9 68 52.9
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.8e-09 65.5 142 34.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 5.0e-09 65.1 50 64.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 5.0e-09 65.1 57 59.6
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 5.0e-09 65.1 42 78.6
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 5.0e-09 65.1 133 34.6
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.6e-09 64.7 57 61.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 8.6e-09 64.3 137 37.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 8.6e-09 64.3 149 34.9
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 8.6e-09 64.3 72 54.2
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.6e-09 64.3 72 54.2
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.6e-09 64.3 130 33.1
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.1e-08 63.9 43 67.4
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.1e-08 63.9 149 35.6
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 1.1e-08 63.9 135 36.3
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-08 63.5 53 60.4
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-08 63.2 39 71.8
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.9e-08 63.2 146 33.6
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.3e-08 62.4 52 61.5
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.3e-08 62.4 84 42.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 3.3e-08 62.4 37 78.4
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.3e-08 62.0 43 69.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.3e-08 62.0 45 68.9
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 4.3e-08 62.0 138 34.1
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.6e-08 61.6 66 51.5
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.6e-08 61.6 45 66.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 5.6e-08 61.6 49 63.3
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 5.6e-08 61.6 128 34.4
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 7.3e-08 61.2 113 39.8
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 7.3e-08 61.2 128 35.2
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.3e-08 61.2 72 52.8
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 7.3e-08 61.2 56 58.9
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 7.3e-08 61.2 133 32.3
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.5e-08 60.8 136 33.8
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 9.5e-08 60.8 77 45.5
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 9.5e-08 60.8 138 34.1
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 2.1e-07 59.7 80 43.8
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 2.1e-07 59.7 99 37.4
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.1e-07 59.7 51 62.7
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.1e-07 59.7 58 53.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 2.8e-07 59.3 53 54.7
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 2.8e-07 59.3 53 54.7
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.6e-07 58.9 94 38.3
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.6e-07 58.9 111 39.6
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.6e-07 58.9 111 39.6
DCAR_020574 Daucus carota HOM05D015198 ORTHO05D002992 4.7e-07 58.5 164 31.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.7e-07 58.5 142 31.0
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.7e-07 58.5 49 63.3
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.7e-07 58.5 41 70.7
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 4.7e-07 58.5 42 71.4
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 4.7e-07 58.5 42 71.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 4.7e-07 58.5 50 64.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 4.7e-07 58.5 45 62.2
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.7e-07 58.5 44 70.5
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 6.1e-07 58.2 45 64.4
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 6.1e-07 58.2 135 34.1
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.1e-07 58.2 120 40.0
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.1e-07 58.2 64 46.9
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.0e-07 57.8 111 38.7
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.0e-07 57.8 39 71.8
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 8.0e-07 57.8 42 69.0
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.0e-06 57.4 54 61.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.0e-06 57.4 43 67.4
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.0e-06 57.4 81 42.0
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 48 60.4
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.4e-06 57.0 97 43.3
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 138 34.1
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.8e-06 56.6 56 57.1
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 55 56.4
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 37 73.0
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 53 58.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.3e-06 56.2 62 51.6
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 2.3e-06 56.2 86 44.2
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.0e-06 55.8 136 30.9
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 3.0e-06 55.8 42 61.9
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 46 58.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 88 38.6
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.0e-06 55.5 120 36.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 43 65.1
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.0e-06 55.5 146 30.8
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 4.0e-06 55.5 61 54.1
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 4.0e-06 55.5 82 47.6
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 4.0e-06 55.5 52 57.7
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.0e-06 55.5 45 66.7
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 4.0e-06 55.5 34 79.4
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.2e-06 55.1 51 56.9
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.2e-06 55.1 74 41.9
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 127 33.1
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 65.0
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 53 54.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.8e-06 54.7 53 54.7
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 6.8e-06 54.7 46 56.5
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 8.9e-06 54.3 58 50.0
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 53 54.7
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 8.9e-06 54.3 111 37.8
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 37 70.3
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 52 55.8
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.9e-06 54.3 40 67.5
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 8.9e-06 54.3 41 61.0


User provided reference genes

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