Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 2.1e-85 318.9 157 100.0
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 3.8e-74 281.6 157 87.9
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 4.2e-73 278.1 157 86.6
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 7.1e-73 277.3 157 87.3
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.2e-72 276.6 157 86.0
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 3.8e-66 255.0 157 76.4
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 4.2e-65 251.5 158 74.7
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 4.2e-65 251.5 155 74.8
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 3.5e-64 248.4 155 74.2
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.3e-63 246.5 154 72.7
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 3.0e-63 245.4 155 73.5
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 3.0e-63 245.4 155 73.5
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 6.7e-63 244.2 155 74.8
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 6.7e-63 244.2 158 71.5
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 6.7e-63 244.2 146 76.0
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.1e-62 243.4 153 73.9
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.1e-62 243.4 157 72.0
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.5e-62 243.0 151 73.5
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.9e-62 242.7 155 72.3
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 2.5e-62 242.3 155 71.6
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 3.3e-62 241.9 158 74.1
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 5.7e-62 241.1 157 68.8
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 9.7e-62 240.4 146 74.7
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.3e-61 240.0 156 73.7
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.3e-61 240.0 158 71.5
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 1.6e-61 239.6 155 71.6
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 2.8e-61 238.8 155 69.7
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 3.7e-61 238.4 158 70.3
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.8e-61 238.0 158 73.4
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.8e-61 238.0 158 73.4
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.8e-61 238.0 155 72.9
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 6.3e-61 237.7 153 71.9
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 6.3e-61 237.7 156 73.1
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.1e-60 236.9 150 70.0
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.1e-60 236.9 158 69.6
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.8e-60 236.1 155 69.7
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 1.8e-60 236.1 153 71.2
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 2.4e-60 235.7 157 68.2
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 2.4e-60 235.7 154 70.8
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 3.1e-60 235.3 158 69.6
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 3.1e-60 235.3 155 68.4
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 5.3e-60 234.6 154 71.4
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 5.3e-60 234.6 150 72.7
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 6.9e-60 234.2 154 70.1
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 1.2e-59 233.4 150 72.7
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.2e-59 233.4 152 72.4
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.5e-59 233.0 154 70.8
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.5e-59 233.0 156 73.1
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.5e-59 233.0 157 66.9
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 2.6e-59 232.3 156 69.2
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 4.5e-59 231.5 146 71.2
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 5.9e-59 231.1 153 69.9
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 7.6e-59 230.7 153 70.6
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 1.0e-58 230.3 158 67.7
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 1.7e-58 229.6 152 70.4
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.7e-58 229.6 154 67.5
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.0e-58 228.0 148 69.6
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 5.0e-58 228.0 156 66.7
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.9e-57 226.1 152 67.8
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 2.5e-57 225.7 157 68.2
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.2e-57 225.3 160 70.6
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 3.2e-57 225.3 153 67.3
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 3.2e-57 225.3 146 71.2
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 5.5e-57 224.6 152 67.8
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 7.2e-57 224.2 126 84.9
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.2e-57 224.2 152 67.8
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.6e-56 223.0 146 74.0
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.6e-56 223.0 152 67.1
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 2.1e-56 222.6 152 66.4
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 4.6e-56 221.5 146 69.2
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.6e-56 221.5 146 69.9
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 6.1e-56 221.1 150 67.3
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 6.1e-56 221.1 152 70.4
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 7.9e-56 220.7 148 68.9
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 7.9e-56 220.7 148 72.3
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 7.9e-56 220.7 157 67.5
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 1.0e-55 220.3 148 72.3
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 1.3e-55 219.9 151 67.5
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.3e-55 219.9 155 63.9
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 1.3e-55 219.9 152 67.1
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.8e-55 219.5 152 66.4
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 3.0e-55 218.8 148 68.9
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 6.7e-55 217.6 152 65.8
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 8.7e-55 217.2 152 65.8
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.5e-54 215.7 152 65.1
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 2.5e-54 215.7 150 66.7
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 4.3e-54 214.9 152 69.1
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 4.3e-54 214.9 144 70.1
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 9.7e-54 213.8 150 66.7
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 6.3e-53 211.1 148 67.6
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 8.2e-53 210.7 146 66.4
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 1.1e-52 210.3 155 66.5
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.4e-52 209.9 138 71.0
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 2.4e-52 209.1 153 64.7
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 2.4e-52 209.1 153 64.7
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.4e-52 209.1 148 67.6
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 3.1e-52 208.8 153 64.7
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 4.1e-52 208.4 153 64.1
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 4.1e-52 208.4 153 64.7
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 4.1e-52 208.4 142 65.5
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 5.3e-52 208.0 144 66.7
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 5.3e-52 208.0 155 63.2
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 9.1e-52 207.2 153 64.7
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-51 206.1 153 64.7
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 3.4e-51 205.3 153 64.1
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.8e-50 201.8 153 63.4
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.8e-50 201.8 153 63.4
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 3.8e-50 201.8 144 64.6
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.0e-47 192.2 148 60.1
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 8.8e-47 190.7 146 61.0
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 1.1e-46 190.3 127 73.2
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 1.5e-46 189.9 153 62.1
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 5.7e-46 188.0 146 60.3
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 5.3e-44 181.4 145 56.6
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 5.9e-43 177.9 115 77.4
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.4e-41 173.3 148 53.4
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 1.6e-40 169.9 144 56.9
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.0e-39 167.2 131 58.8
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 8.8e-39 164.1 148 53.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.0e-38 162.9 121 62.0
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.2e-37 159.5 148 46.6
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 3.7e-37 158.7 99 71.7
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.0e-34 150.6 149 49.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 4.7e-32 141.7 148 49.3
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 2.3e-31 139.4 147 49.0
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.0e-31 139.0 100 63.0
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 5.2e-31 138.3 141 51.1
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 1.2e-30 137.1 135 54.1
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 7.5e-30 134.4 97 62.9
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 8.5e-26 120.9 147 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.3e-21 107.1 84 57.1
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 6.3e-21 104.8 85 55.3
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.8e-20 103.2 90 53.3
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 2.4e-20 102.8 148 39.9


User provided reference genes

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