Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.4e-89 332.8 157 100.0
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.3e-60 234.6 166 72.9
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.2e-59 233.4 166 72.3
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 5.0e-58 228.0 141 73.8
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.9e-57 226.1 166 71.1
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.9e-57 226.1 166 71.1
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.6e-56 223.0 161 70.8
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 8.7e-55 217.2 159 68.6
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.5e-51 206.5 139 71.2
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.6e-46 189.1 95 94.7
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.4e-41 173.3 135 63.0
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.6e-38 162.5 121 62.8
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.4e-36 156.8 142 57.7
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.6e-32 143.3 123 57.7
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 3.3e-30 135.6 123 52.0
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 5.7e-30 134.8 127 49.6
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 5.7e-30 134.8 127 50.4
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 7.5e-30 134.4 135 50.4
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.2e-29 132.9 143 48.3
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 2.8e-29 132.5 131 48.9
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 8.2e-29 131.0 145 48.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 8.2e-29 131.0 127 48.0
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-28 130.6 144 47.2
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 1.4e-28 130.2 127 47.2
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.4e-28 130.2 90 70.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.4e-28 130.2 132 47.7
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.4e-28 130.2 146 47.3
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.8e-28 129.8 144 47.2
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.8e-28 129.8 144 47.2
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 2.4e-28 129.4 123 49.6
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 2.4e-28 129.4 139 49.6
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-28 129.4 144 46.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 2.4e-28 129.4 127 48.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 7.0e-28 127.9 133 52.6
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 7.0e-28 127.9 126 47.6
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.0e-28 127.9 126 47.6
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 9.1e-28 127.5 136 47.1
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 2.7e-27 125.9 122 51.6
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 3.5e-27 125.6 116 50.9
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 4.5e-27 125.2 144 47.2
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 5.9e-27 124.8 133 51.1
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 7.7e-27 124.4 133 47.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.0e-26 124.0 136 46.3
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.3e-26 123.6 128 49.2
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.9e-26 122.5 154 42.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.0e-26 121.7 132 47.7
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 6.5e-26 121.3 135 45.2
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 8.5e-26 120.9 121 47.1
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-25 120.6 132 47.0
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.1e-25 120.6 133 50.4
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.1e-25 120.6 130 48.5
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.2e-25 119.0 135 47.4
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.2e-25 119.0 135 47.4
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.5e-25 118.2 152 44.1
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 5.5e-25 118.2 130 48.5
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 9.4e-25 117.5 122 50.8
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.1e-24 116.3 94 60.6
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.6e-24 115.5 133 44.4
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 6.1e-24 114.8 119 46.2
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 8.0e-24 114.4 142 45.8
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.4e-23 113.6 132 45.5
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.8e-23 113.2 137 44.5
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 3.0e-23 112.5 119 47.9
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.0e-23 112.5 154 40.3
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.0e-23 112.5 154 40.3
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 4.0e-23 112.1 117 48.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.6e-22 109.4 133 42.9
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 3.4e-22 109.0 146 40.4
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 5.7e-22 108.2 149 40.3
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.7e-21 106.7 115 46.1
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-21 106.7 148 43.2
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.7e-21 106.7 116 47.4
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 1.7e-21 106.7 117 47.0
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 2.8e-21 105.9 141 41.1
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 4.8e-21 105.1 113 47.8
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.3e-21 104.8 133 45.9
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.3e-21 104.8 151 41.1
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-20 103.6 153 37.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.8e-20 103.2 139 40.3
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.4e-20 102.8 114 43.9
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 3.1e-20 102.4 108 45.4
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.1e-20 102.1 153 38.6
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 9.1e-20 100.9 119 43.7
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.6e-19 100.1 118 42.4
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.0e-19 99.8 138 42.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.7e-19 99.4 132 38.6
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.7e-19 99.4 128 43.0
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.7e-19 99.4 121 44.6
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 5.9e-19 98.2 133 42.9
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.7e-18 96.7 137 40.9
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.3e-18 96.3 128 39.1
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 2.3e-18 96.3 138 42.0
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 3.8e-18 95.5 115 42.6
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 5.0e-18 95.1 137 42.3
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 5.0e-18 95.1 110 48.2
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 6.5e-18 94.7 140 38.6
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 6.5e-18 94.7 106 46.2
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 8.6e-18 94.4 147 40.1
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.5e-17 93.6 117 44.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 3.3e-17 92.4 135 42.2
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 5.5e-17 91.7 116 44.0
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 9.5e-17 90.9 130 38.5
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.2e-16 90.5 121 38.0
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.6e-16 90.1 131 38.2
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.1e-16 88.2 129 41.1
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 8.0e-16 87.8 122 37.7
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.4e-15 87.0 127 37.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.4e-15 87.0 120 40.8
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.8e-15 86.7 156 34.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 8.9e-15 84.3 86 48.8
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.2e-14 84.0 90 45.6
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 1.5e-14 83.6 82 50.0
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 2.0e-14 83.2 97 45.4
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.4e-14 82.4 152 31.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.4e-14 82.0 133 37.6
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 4.4e-14 82.0 138 37.7
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 9.8e-14 80.9 113 39.8
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-13 80.5 138 36.2
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.3e-13 80.5 100 43.0
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.3e-13 80.5 127 40.2
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.3e-13 80.5 127 40.2
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.7e-13 80.1 124 34.7
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.3e-13 78.2 139 36.0
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.4e-12 77.0 139 35.3
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.8e-12 76.6 102 43.1
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-12 76.3 138 36.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.1e-12 75.5 138 34.8
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.1e-12 75.5 56 57.1
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.4e-12 75.1 102 40.2
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.0e-11 73.2 91 49.5
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 2.0e-11 73.2 131 32.8
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.7e-11 72.8 135 34.8
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.6e-10 67.8 82 45.1
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.1e-09 67.4 95 34.7
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.1e-09 67.4 126 30.2
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.5e-09 67.0 126 30.2
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 2.3e-07 59.7 116 35.3
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 2.3e-07 59.7 85 34.1
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 3.0e-07 59.3 63 46.0
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.8e-07 58.2 94 30.9
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 1.5e-06 57.0 113 33.6
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 2.0e-06 56.6 113 33.6
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 3.4e-06 55.8 83 34.9
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 4.4e-06 55.5 75 36.0
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 5.8e-06 55.1 93 36.6


User provided reference genes

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