Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.5e-181 639.4 325 100.0
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.6e-180 634.8 325 99.1
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.2e-178 629.8 325 98.2
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 2.0e-178 629.0 325 97.8
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 3.4e-178 628.2 325 97.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.6e-178 627.1 326 98.2
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.3e-177 626.3 326 97.5
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.0e-170 602.4 325 93.5
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 6.4e-169 597.4 325 92.9
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 7.1e-168 594.0 325 92.3
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.1e-167 592.4 325 92.3
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 6.7e-166 587.4 325 90.8
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.7e-164 581.6 325 90.8
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.8e-163 579.3 325 90.8
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.2e-162 576.6 325 89.5
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.3e-161 573.2 325 88.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.2e-161 572.4 325 88.6
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.9e-161 571.2 325 87.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 6.5e-161 570.9 325 88.0
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 6.5e-161 570.9 325 88.3
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 8.4e-161 570.5 352 83.0
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.5e-160 568.9 326 88.7
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 3.2e-160 568.5 325 88.0
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 4.2e-160 568.2 325 87.4
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.1e-159 565.8 325 87.4
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 2.1e-159 565.8 325 87.1
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.7e-159 565.5 325 87.4
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 6.0e-159 564.3 325 87.4
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.0e-159 564.3 325 86.8
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 7.9e-159 563.9 325 85.5
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.0e-158 563.5 325 85.5
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.0e-158 563.5 325 86.8
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.0e-158 563.5 325 86.2
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.3e-158 562.4 325 85.8
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 2.3e-158 562.4 325 86.2
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 2.3e-158 562.4 325 87.4
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 5.1e-158 561.2 325 85.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 8.7e-158 560.5 325 87.1
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.5e-157 559.7 325 86.5
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.9e-157 559.3 325 86.2
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-157 558.9 325 86.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-157 558.9 325 86.8
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 4.3e-157 558.1 325 87.1
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 4.3e-157 558.1 325 87.1
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 7.4e-157 557.4 325 86.2
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.4e-157 557.4 325 86.5
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.6e-157 557.0 325 85.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 9.6e-157 557.0 325 86.2
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.1e-156 555.8 325 85.5
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 2.1e-156 555.8 325 84.6
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 8.2e-156 553.9 325 85.8
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 8.2e-156 553.9 324 86.1
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 8.2e-156 553.9 325 85.8
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 8.2e-156 553.9 325 84.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.1e-155 553.5 325 85.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.1e-155 552.0 325 86.2
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.3e-155 551.2 325 84.0
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 9.0e-155 550.4 325 85.5
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 9.0e-155 550.4 325 85.8
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.2e-154 550.1 300 92.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.0e-154 549.3 325 84.9
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 5.8e-154 547.7 325 85.5
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 7.6e-154 547.4 325 85.2
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.0e-153 547.0 325 84.9
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.0e-153 547.0 325 84.6
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.3e-153 546.6 331 84.3
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.3e-153 546.6 325 85.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.7e-153 546.2 325 84.9
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.7e-153 546.2 325 84.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.2e-153 545.8 324 84.6
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 2.2e-153 545.8 325 84.6
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-153 544.7 325 84.3
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-153 544.7 325 84.3
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 5.0e-153 544.7 325 84.3
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 5.0e-153 544.7 325 84.3
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.5e-153 544.3 325 84.3
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 6.5e-153 544.3 325 84.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 8.4e-153 543.9 325 84.3
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-152 543.5 324 84.0
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.4e-152 543.1 325 83.7
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 7.2e-152 540.8 325 83.7
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 7.2e-152 540.8 325 84.0
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.5e-151 538.5 315 85.4
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 2.3e-150 535.8 363 77.7
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.3e-150 535.8 379 75.2
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 5.1e-150 534.6 327 81.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 6.7e-150 534.3 324 83.6
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.1e-149 533.5 325 82.8
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.5e-149 533.1 327 81.3
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.5e-149 532.3 325 82.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.8e-148 528.9 325 82.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 9.0e-147 523.9 325 80.3
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 6.5e-145 517.7 326 82.2
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 8.5e-145 517.3 324 80.2
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.5e-144 515.8 325 79.4
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.2e-144 515.0 325 79.1
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 2.1e-143 512.7 449 62.6
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.6e-143 511.9 302 83.8
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.0e-142 508.8 332 79.2
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-140 503.1 295 87.8
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.4e-139 500.0 325 78.5
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.4e-138 495.4 325 79.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 7.7e-138 494.2 325 77.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.5e-137 491.1 325 79.7
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.2e-136 488.8 326 79.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 2.1e-135 486.1 330 74.2
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.0e-134 483.8 325 73.5
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 6.7e-134 481.1 330 79.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 7.0e-131 471.1 324 76.5
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.6e-130 469.9 325 71.1
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.5e-129 464.2 371 67.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.1e-125 453.8 279 79.9
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 2.6e-125 452.6 323 75.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-114 417.2 233 90.1
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.2e-114 417.2 324 63.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.6e-111 405.6 234 85.9
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.4e-110 403.7 318 62.9
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.7e-108 396.7 324 62.7
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.1e-103 379.8 222 87.4
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 8.3e-100 367.9 270 71.1
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.4e-99 367.1 317 62.8
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.0e-93 346.7 325 64.0
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-91 339.3 197 86.3
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 3.0e-89 332.8 234 69.7
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.2e-87 325.1 331 58.0
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 2.0e-85 320.1 220 76.8
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-83 314.3 220 75.0
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.2e-82 310.8 167 92.2
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 4.7e-79 298.9 220 73.2
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.9e-76 289.7 158 92.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.0e-73 279.6 333 44.1
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.8e-68 262.7 279 56.6
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 3.5e-66 256.1 158 81.0
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.3e-65 254.2 325 50.2
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 7.9e-58 228.4 129 86.8
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 7.6e-53 211.8 128 82.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.5e-40 170.2 96 86.5
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 4.3e-40 169.5 181 54.7
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.8e-39 166.8 158 58.2
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 8.2e-39 165.2 150 56.7
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.0e-36 158.3 103 76.7
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.9e-35 154.1 88 85.2
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 6.1e-34 149.1 89 79.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 7.9e-34 148.7 85 89.4
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.1e-30 136.3 77 89.6
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.4e-29 133.3 74 86.5
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 4.5e-29 132.9 69 85.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.0e-28 131.7 84 84.5
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 1.3e-28 131.3 80 80.0
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.8e-25 120.9 75 77.3
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 3.9e-25 119.8 72 77.8
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.8e-23 113.6 72 80.6
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 3.4e-21 106.7 69 75.4
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-19 100.1 60 86.7
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.9e-17 93.2 58 84.5
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.0e-09 68.6 85 49.4
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 2.2e-07 60.8 33 84.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.7e-07 60.1 77 44.2
A10p19460 Brassica napus HOM05D004483 ORTHO05D101033 9.1e-06 55.5 33 84.8


User provided reference genes

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