Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1839.3 925 100.0
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1752.6 957 93.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1676.8 969 88.1
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1674.8 998 86.5
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1670.6 969 87.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1651.0 969 87.2
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1407.5 985 72.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1400.2 970 74.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 986 73.4
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 979 73.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 982 72.4
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1372.8 989 71.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1365.5 981 72.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 987 71.5
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1362.8 984 71.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 985 71.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 984 70.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 980 71.3
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 970 72.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1353.2 998 69.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1353.2 976 71.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1352.8 974 72.3
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1352.8 983 70.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 985 69.9
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1350.1 984 70.3
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1348.2 927 75.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1347.8 929 75.1
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 973 72.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1342.4 980 71.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1341.3 984 69.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 984 69.6
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 982 70.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 976 71.3
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1332.0 988 69.2
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1326.2 1009 67.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 986 69.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1322.0 965 70.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1321.6 987 68.9
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1009 67.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1320.4 1002 68.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1314.7 1007 67.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1020 66.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 977 70.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1313.5 1000 67.6
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1311.6 981 68.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 975 69.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 983 68.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 983 67.8
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 975 68.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1301.2 1034 66.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1300.0 989 69.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1299.6 983 68.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1298.5 979 68.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 997 68.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1295.0 975 68.2
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 992 68.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1293.1 987 68.0
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 992 68.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 903 74.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 992 67.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 961 68.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 983 66.8
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 987 67.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 983 66.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 982 67.3
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1277.3 982 68.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1275.0 981 66.7
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 983 66.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1272.7 983 66.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 972 67.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 983 66.5
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1270.0 983 66.5
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1266.5 980 66.3
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 991 66.2
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1262.3 984 66.5
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 996 65.5
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1260.7 987 65.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 976 65.4
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1252.3 999 66.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1249.2 984 66.1
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 973 67.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 954 67.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1234.9 1058 62.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1233.4 940 67.8
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1233.0 995 65.1
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1224.9 987 64.7
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 975 65.6
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1213.0 989 64.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 984 64.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 990 64.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1198.7 968 65.2
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1193.7 937 66.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1189.9 1075 59.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1189.9 989 62.2
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1184.5 946 65.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1181.0 976 64.2
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1181.0 976 63.6
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1180.2 967 64.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1177.9 951 65.6
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 972 63.2
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1172.9 973 63.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1172.5 939 65.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 991 62.3
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1138.3 975 61.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1137.5 1016 59.5
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1131.7 1004 60.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1124.8 1113 54.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1102.8 1149 52.9
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1100.9 971 59.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1098.6 835 68.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1080.9 984 57.5
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1077.8 970 61.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 1.1e-309 1066.6 984 57.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 6.9e-309 1063.9 892 63.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 5.0e-307 1057.7 867 66.1
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.2e-305 1053.1 987 57.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 2.3e-304 1048.9 990 57.5
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 7.2e-298 1027.3 582 90.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-286 989.6 763 67.8
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.9e-283 978.8 911 57.1
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.6e-276 956.4 835 62.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 4.2e-274 948.3 934 56.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.6e-265 919.8 752 65.7
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 8.9e-248 860.9 1020 49.0
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.3e-243 847.0 602 72.8
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.7e-241 838.6 1022 47.5
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.3e-238 830.5 842 55.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-233 813.9 950 48.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-226 790.8 597 67.3
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.3e-214 750.7 624 63.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.8e-211 740.3 869 47.2
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.9e-210 736.9 895 46.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.5e-205 718.8 866 45.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 9.0e-200 701.4 1047 41.8
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 8.8e-163 578.6 460 67.2
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 2.9e-158 563.5 360 79.2
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 4.0e-155 553.1 391 72.9
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.1e-152 543.1 554 52.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-141 508.1 410 67.3
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 8.0e-140 502.3 430 64.9
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-132 478.4 527 51.4
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 4.6e-95 353.6 179 89.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-89 335.1 251 69.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.9e-89 333.6 233 73.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.9e-77 295.0 162 83.3
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-76 292.4 349 52.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.4e-75 288.1 238 67.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.9e-74 283.5 150 86.7
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.4e-72 278.9 830 28.3
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.3e-62 245.0 239 55.2
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.1e-59 234.6 174 62.6
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-55 222.6 277 51.6
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 9.7e-53 213.0 259 51.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-50 204.5 114 78.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.5e-48 198.4 148 75.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 2.7e-47 194.9 896 25.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.9e-33 148.3 116 67.2
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.5e-32 146.0 77 85.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.0e-30 138.3 154 53.2
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.0e-30 138.3 79 74.7
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-28 132.5 107 61.7
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.6e-25 120.6 112 61.6
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.1e-22 111.7 91 62.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.8e-15 88.6 117 47.9
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 5.2e-14 84.3 65 56.9
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.5e-13 80.5 90 45.6
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-12 79.7 66 57.6
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.7e-12 78.2 50 74.0
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-11 76.3 46 78.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 9.2e-11 73.6 57 59.6
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.3e-09 68.9 74 45.9
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.3e-09 68.9 74 45.9
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.6e-09 67.4 56 55.4
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 8.9e-06 57.0 71 50.7


User provided reference genes

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