Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 2.3e-38 161.8 84 100.0
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.2e-29 132.9 89 67.4
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 2.0e-29 132.1 84 79.8
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 9.5e-24 113.2 89 59.6
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 8.1e-23 110.2 68 70.6
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.6e-21 105.1 67 67.2
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 3.4e-21 104.8 71 66.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.2e-19 98.2 86 66.3
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 4.1e-19 97.8 85 64.7
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 7.1e-19 97.1 84 70.2
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 2.1e-18 95.5 74 63.5
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.0e-17 93.2 86 65.1
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.3e-17 92.8 87 52.9
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.3e-17 92.8 88 62.5
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 3.0e-17 91.7 85 60.0
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 5.1e-17 90.9 90 65.6
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 5.1e-17 90.9 90 65.6
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 5.1e-17 90.9 90 65.6
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 5.1e-17 90.9 64 57.8
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 5.1e-17 90.9 59 61.0
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.1e-16 89.7 90 64.4
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.1e-16 89.7 90 64.4
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.5e-16 89.4 67 53.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 1.9e-16 89.0 55 63.6
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.9e-16 89.0 81 63.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.3e-16 88.2 73 60.3
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.3e-16 87.8 67 58.2
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 4.3e-16 87.8 69 53.6
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 5.6e-16 87.4 78 48.7
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 7.3e-16 87.0 64 59.4
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 9.5e-16 86.7 57 66.7
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 9.5e-16 86.7 82 61.0
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.1e-15 85.5 65 58.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.8e-15 85.1 73 58.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.6e-15 84.7 61 57.4
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 3.6e-15 84.7 82 63.4
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 8.1e-15 83.6 67 58.2
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 8.1e-15 83.6 64 57.8
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.1e-14 83.2 65 55.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.1e-14 83.2 72 59.7
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 61 54.1
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 61 54.1
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 61 54.1
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 61 54.1
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 8.9e-14 80.1 65 52.3
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.2e-13 79.7 65 55.4
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.5e-13 79.3 71 50.7
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.4e-13 78.2 69 58.0
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.4e-13 78.2 50 58.0
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 4.4e-13 77.8 64 56.2
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.4e-13 77.8 84 51.2
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.4e-13 77.8 84 51.2
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 4.4e-13 77.8 61 55.7
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.8e-13 77.4 67 53.7
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 5.8e-13 77.4 68 57.4
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 7.6e-13 77.0 58 56.9
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 7.6e-13 77.0 58 56.9
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.3e-12 76.3 81 54.3
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.3e-12 76.3 64 57.8
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.7e-12 75.9 67 53.7
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.2e-12 75.5 56 58.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.2e-12 75.5 56 58.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 2.2e-12 75.5 56 58.9
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.9e-12 74.3 67 50.7
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.9e-12 74.3 67 50.7
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 4.9e-12 74.3 69 52.2
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.4e-11 72.8 62 54.8
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.4e-11 72.8 55 52.7
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 1.9e-11 72.4 61 54.1
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 1.9e-11 72.4 68 55.9
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 2.4e-11 72.0 59 50.8
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 2.4e-11 72.0 53 52.8
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 3.2e-11 71.6 58 51.7
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 4.1e-11 71.2 50 58.0
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 5.4e-11 70.9 52 57.7
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 9.2e-11 70.1 64 48.4
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.6e-10 69.3 55 50.9
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.5e-10 68.2 51 56.9
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 3.5e-10 68.2 71 50.7
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 4.6e-10 67.8 53 54.7
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 6.0e-10 67.4 60 53.3
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 7.8e-10 67.0 58 53.4
Solyc01g112230.4 Solanum lycopersicum HOM05D007709 ORTHO05D009577 3.6e-07 58.2 43 62.8
ClCG02G010380 Citrullus lanatus HOM05D007709 ORTHO05D009577 4.7e-07 57.8 57 47.4
Eucgr.G01861 Eucalyptus grandis HOM05D007709 ORTHO05D009577 6.2e-07 57.4 46 56.5
Medtr7g053460 Medicago truncatula HOM05D007709 ORTHO05D009577 5.2e-06 54.3 57 49.1
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 9.0e-06 53.5 50 46.0
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 9.0e-06 53.5 51 47.1


User provided reference genes

Program Settings