Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.3e-279 965.7 473 100.0
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 6.6e-231 803.9 475 85.1
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 5.6e-230 800.8 474 85.7
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.6e-203 712.2 465 76.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-203 711.8 464 76.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 6.4e-202 707.6 474 76.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.8e-199 699.5 498 72.3
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.9e-198 696.0 468 73.5
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 4.3e-198 694.9 467 73.7
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 5.6e-198 694.5 465 73.5
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 9.6e-198 693.7 470 73.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.6e-197 693.0 464 74.4
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.8e-196 689.5 465 73.3
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.1e-196 688.7 471 72.8
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 3.1e-196 688.7 470 72.3
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 4.0e-196 688.3 470 73.0
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.2e-195 686.8 468 71.8
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.0e-195 686.0 470 72.1
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.4e-195 685.3 471 71.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 7.6e-195 684.1 469 72.7
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 9.9e-195 683.7 471 73.5
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.2e-194 682.6 472 71.6
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.2e-194 682.6 465 72.7
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.8e-194 681.8 463 72.1
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 4.9e-194 681.4 470 71.9
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.1e-193 680.2 465 71.4
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.6e-192 676.4 464 71.1
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 6.0e-192 674.5 470 70.6
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.3e-191 673.3 468 71.4
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.3e-191 672.5 467 72.2
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 2.3e-191 672.5 462 71.6
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.5e-190 669.8 462 71.2
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.9e-190 669.5 464 70.5
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 4.3e-190 668.3 461 71.6
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.4e-190 667.5 465 71.4
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.7e-189 665.2 470 69.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 3.7e-189 665.2 470 70.4
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.8e-188 662.9 470 69.4
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 4.0e-188 661.8 469 70.8
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 4.0e-188 661.8 468 69.9
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.5e-187 659.8 470 68.7
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.5e-187 659.8 471 68.8
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 2.0e-187 659.4 469 70.1
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.5e-187 658.3 459 69.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.8e-186 655.2 469 69.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.9e-185 652.9 464 70.0
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.1e-185 651.0 460 70.2
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 7.9e-184 647.5 462 70.6
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.0e-183 647.1 465 69.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-183 646.7 459 70.2
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 2.3e-183 646.0 468 69.4
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 3.9e-183 645.2 464 68.8
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.1e-182 643.7 465 69.9
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 5.7e-182 641.3 467 69.0
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.1e-180 637.1 464 68.3
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 4.1e-180 635.2 464 67.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 5.3e-180 634.8 483 66.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 5.3e-180 634.8 468 68.8
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 6.9e-180 634.4 465 69.2
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 7.6e-179 630.9 468 68.6
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 6.5e-178 627.9 462 68.2
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.9e-177 626.3 448 70.5
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.5e-177 625.9 460 68.5
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.3e-177 624.0 466 68.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.6e-176 623.2 443 70.9
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 5.1e-175 618.2 460 67.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.5e-174 615.9 473 66.4
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 8.2e-173 610.9 462 66.7
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.4e-172 610.1 432 69.7
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.8e-172 609.8 443 70.7
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.8e-167 590.9 490 63.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 5.0e-162 575.1 679 49.5
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.4e-161 573.5 461 63.3
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.2e-161 572.0 437 66.8
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.1e-160 569.7 468 63.9
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 6.1e-160 568.2 467 64.7
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 5.2e-159 565.1 469 63.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 2.6e-155 552.7 385 69.1
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-154 550.1 413 67.1
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 6.5e-154 548.1 292 92.5
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-153 546.6 413 66.8
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.0e-151 539.3 380 71.1
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.1e-148 529.3 367 70.0
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 4.1e-148 528.9 377 69.5
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 4.1e-148 528.9 408 65.4
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 5.3e-148 528.5 464 60.3
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.7e-141 506.9 287 86.4
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.4e-140 503.8 414 63.0
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 3.8e-138 495.7 524 54.4
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 7.5e-134 481.5 455 57.1
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 8.3e-133 478.0 287 79.4
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.0e-132 474.9 466 53.9
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.6e-131 473.8 456 53.3
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.0e-131 473.4 381 66.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.2e-128 464.2 284 77.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 3.0e-127 459.5 284 76.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.2e-126 457.6 463 53.3
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.5e-126 454.9 455 56.0
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 6.4e-125 451.8 366 63.7
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.4e-124 448.7 461 51.6
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.6e-120 436.0 464 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.8e-119 433.7 467 51.6
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.3e-117 427.6 285 72.3
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.4e-116 422.2 219 93.2
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.2e-115 421.0 474 51.3
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 4.6e-115 419.1 219 91.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.5e-113 414.1 464 50.4
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.0e-111 406.0 404 51.5
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 9.9e-110 401.4 452 51.3
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.9e-108 397.1 469 49.7
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.1e-108 396.0 289 67.1
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.2e-96 357.8 469 45.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.1e-96 357.1 479 42.2
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.6e-88 330.9 448 45.1
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 3.0e-74 283.5 363 43.8
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.0e-71 271.9 170 76.5
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.0e-71 271.9 170 76.5
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.8e-69 266.5 161 77.6
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.1e-67 260.8 152 79.6
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.7e-56 223.4 213 54.5
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 4.5e-54 216.5 203 60.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.7e-53 214.5 177 59.3
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.3e-50 204.1 157 66.9
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.6e-43 181.4 151 60.9
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 8.8e-42 175.6 157 56.7
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.4e-41 173.3 95 85.3
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 6.3e-40 169.5 151 57.0
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.0e-39 166.0 152 55.9
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.0e-37 162.2 84 92.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.9e-37 160.6 235 38.7
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.4e-33 146.7 149 49.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.4e-33 146.7 95 68.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.7e-33 145.6 112 67.0
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 9.7e-33 145.6 104 70.2
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 3.2e-28 130.6 105 58.1
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.0e-25 121.3 71 87.3
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 5.4e-23 113.2 68 86.8
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.6e-19 101.7 67 77.6
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.9e-16 90.1 45 91.1
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.0e-14 84.7 77 57.1
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 7.8e-14 82.8 48 72.9


User provided reference genes

Program Settings