Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 2.4e-133 479.2 304 100.0
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.6e-105 386.7 303 72.3
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 2.8e-65 253.1 304 52.6
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 2.4e-64 250.0 305 52.8
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 5.1e-43 179.1 318 39.3
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 1.8e-35 154.1 138 71.7
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.2e-22 110.5 87 62.1
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 6.5e-22 109.0 305 32.1
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 6.5e-22 109.0 314 29.9
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 6.5e-22 109.0 296 32.4
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.2e-20 104.8 303 31.7
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 1.6e-20 104.4 317 31.2
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.7e-20 103.6 303 30.4
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 2.7e-20 103.6 82 59.8
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 6.1e-20 102.4 290 31.7
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 6.1e-20 102.4 301 31.6
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 1.0e-19 101.7 318 29.9
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.4e-19 101.3 281 33.1
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 1.8e-19 100.9 289 31.1
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.3e-19 100.5 81 61.7
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 3.9e-19 99.8 304 31.6
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 5.1e-19 99.4 83 57.8
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 6.7e-19 99.0 90 55.6
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 8.8e-19 98.6 313 27.8
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.1e-18 98.2 91 53.8
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 1.5e-18 97.8 92 53.3
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 2.0e-18 97.4 81 55.6
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 3.3e-18 96.7 86 53.5
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 3.3e-18 96.7 86 53.5
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 4.4e-18 96.3 312 28.2
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 5.7e-18 95.9 289 30.1
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 7.4e-18 95.5 81 54.3
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.3e-17 94.7 83 55.4
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.3e-17 94.7 80 53.8
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 1.3e-17 94.7 83 54.2
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 2.2e-17 94.0 296 29.1
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 2.2e-17 94.0 87 55.2
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 2.8e-17 93.6 316 30.7
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 3.7e-17 93.2 82 59.8
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 4.8e-17 92.8 86 54.7
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 6.3e-17 92.4 92 50.0
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 8.2e-17 92.0 89 50.6
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.1e-16 91.7 80 55.0
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 1.1e-16 91.7 308 28.2
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 1.4e-16 91.3 91 49.5
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.4e-16 91.3 91 49.5
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.8e-16 90.9 89 52.8
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 1.8e-16 90.9 301 29.9
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 1.8e-16 90.9 78 53.8
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.1e-16 90.1 91 49.5
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 3.1e-16 90.1 307 28.0
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 3.1e-16 90.1 92 47.8
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 4.1e-16 89.7 80 51.2
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 5.3e-16 89.4 89 49.4
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 7.0e-16 89.0 77 50.6
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-15 88.2 83 51.8
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-15 88.2 83 51.8
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 1.2e-15 88.2 83 51.8
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 1.2e-15 88.2 83 51.8
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 1.2e-15 88.2 82 53.7
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 1.2e-15 88.2 91 52.7
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 1.2e-15 88.2 86 47.7
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.6e-15 87.8 82 54.9
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 1.6e-15 87.8 79 55.7
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 2.0e-15 87.4 84 52.4
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.5e-15 86.7 84 52.4
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 3.5e-15 86.7 289 29.1
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 4.5e-15 86.3 86 54.7
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 1.0e-14 85.1 81 49.4
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 1.0e-14 85.1 79 50.6
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.0e-14 85.1 333 30.3
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 1.3e-14 84.7 303 28.1
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.3e-14 84.7 83 51.8
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 1.7e-14 84.3 79 54.4
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.7e-14 84.3 79 49.4
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.7e-14 84.3 142 35.9
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 2.2e-14 84.0 79 53.2
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.2e-14 84.0 290 29.3
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 2.2e-14 84.0 302 27.5
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 5.0e-14 82.8 77 49.4
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 6.5e-14 82.4 79 51.9
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 6.5e-14 82.4 79 51.9
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 6.5e-14 82.4 76 53.9
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 8.5e-14 82.0 304 30.3
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 8.5e-14 82.0 314 28.0
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 1.1e-13 81.6 74 47.3
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 4.2e-13 79.7 81 46.9
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 9.4e-13 78.6 89 40.4
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 9.4e-13 78.6 84 42.9
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.2e-12 78.2 292 28.4
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 1.6e-12 77.8 329 27.7
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.6e-12 77.8 88 43.2
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 2.1e-12 77.4 88 40.9
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 2.7e-12 77.0 86 44.2
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.7e-12 77.0 90 43.3
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 4.7e-12 76.3 80 47.5
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 8.0e-12 75.5 76 42.1
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 2.3e-11 73.9 301 24.9
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 4.0e-11 73.2 79 45.6
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 5.2e-11 72.8 79 50.6
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 8.8e-11 72.0 79 40.5
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 8.8e-11 72.0 84 42.9
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 3.3e-10 70.1 78 42.3
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 5.7e-10 69.3 310 25.5
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 5.7e-10 69.3 84 35.7
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.7e-10 69.3 83 38.6
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.7e-10 69.3 83 38.6
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 7.5e-10 68.9 77 46.8
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 7.5e-10 68.9 64 51.6
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 1.3e-09 68.2 81 38.3
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.3e-09 68.2 81 38.3
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 1.7e-09 67.8 80 43.8
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 4.8e-09 66.2 76 38.2
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 4.8e-09 66.2 71 45.1
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 1.1e-08 65.1 80 40.0
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 1.4e-08 64.7 74 37.8
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 1.4e-08 64.7 61 54.1
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 1.4e-08 64.7 78 38.5
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 1.4e-08 64.7 85 44.7
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 1.8e-08 64.3 78 41.0
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 2.4e-08 63.9 79 39.2
Peaxi162Scf01216g00009 Petunia axillaris HOM05D023859 ORTHO05D026030 3.1e-08 63.5 75 42.7
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 3.1e-08 63.5 79 38.0
PSO782G4784 Papaver somniferum HOM05D061112 ORTHO05D005382 1.2e-07 61.6 83 37.3
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 1.6e-07 61.2 80 38.8
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 2.0e-07 60.8 74 41.9
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 2.7e-07 60.5 264 27.3
Gorai.002G077300 Gossypium raimondii HOM05D013385 ORTHO05D005382 2.7e-07 60.5 77 44.2
SEGI_22038 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 2.7e-07 60.5 79 36.7
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 2.7e-07 60.5 70 41.4
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 3.5e-07 60.1 264 26.1
Gohir.A01G069700 Gossypium hirsutum HOM05D013385 ORTHO05D005382 3.5e-07 60.1 74 41.9
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 3.5e-07 60.1 74 36.5
Cfa014502 Carpinus fangiana HOM05D008701 ORTHO05D010238 4.5e-07 59.7 74 40.5
CiPaw.03G167300 Carya illinoinensis HOM05D008701 ORTHO05D010238 4.5e-07 59.7 74 39.2
Haze_13046 Corylus avellana HOM05D008701 ORTHO05D010238 4.5e-07 59.7 74 40.5
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 5.9e-07 59.3 264 26.1
Gohir.D01G056900 Gossypium hirsutum HOM05D013385 ORTHO05D005382 5.9e-07 59.3 77 44.2
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 7.7e-07 58.9 89 38.2
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 7.7e-07 58.9 88 39.8
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 1.0e-06 58.5 74 35.1
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 1.0e-06 58.5 74 35.1
PSO063G0432 Papaver somniferum HOM05D061112 ORTHO05D005382 1.0e-06 58.5 83 37.3
PSO541G2888 Papaver somniferum HOM05D008701 ORTHO05D010238 1.7e-06 57.8 83 41.0
PGR083G0466 Punica granatum HOM05D012187 ORTHO05D005382 2.2e-06 57.4 69 47.8
RhsimUnG0172600 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.2e-06 57.4 75 40.0
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 2.9e-06 57.0 77 39.0
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 2.9e-06 57.0 67 35.8
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 3.8e-06 56.6 264 26.9
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 3.8e-06 56.6 264 26.9
Manes.15G081600 Manihot esculenta HOM05D006433 ORTHO05D005382 6.5e-06 55.8 75 40.0
Duzib268G1412 Durio zibethinus HOM05D013385 ORTHO05D005382 8.5e-06 55.5 74 36.5


User provided reference genes

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