Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.3e-28 128.3 67 100.0
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.5e-27 124.8 67 95.5
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 9.0e-25 116.3 67 86.6
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 9.0e-25 116.3 67 86.6
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.2e-24 115.9 67 88.1
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.4e-22 108.2 67 79.1
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 4.2e-22 107.5 67 79.1
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 2.1e-21 105.1 67 77.6
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 3.0e-20 101.3 66 72.7
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 3.9e-20 100.9 67 71.6
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 3.9e-20 100.9 67 71.6
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 3.9e-20 100.9 67 71.6
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 1.5e-19 99.0 64 76.6
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 2.5e-19 98.2 67 70.1
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 3.3e-19 97.8 64 71.9
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 3.3e-19 97.8 67 68.7
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 3.3e-19 97.8 67 70.1
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 7.4e-19 96.7 64 68.8
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 7.4e-19 96.7 67 71.6
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 9.6e-19 96.3 64 70.3
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 9.6e-19 96.3 64 70.3
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 9.6e-19 96.3 64 68.8
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 1.3e-18 95.9 67 67.2
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 1.6e-18 95.5 67 68.7
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 2.1e-18 95.1 64 68.8
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.8e-18 94.7 64 71.9
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 2.8e-18 94.7 67 67.2
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 2.8e-18 94.7 64 70.3
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 6.2e-18 93.6 64 67.2
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 6.2e-18 93.6 64 70.3
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 8.1e-18 93.2 64 68.8
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 1.1e-17 92.8 67 70.1
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 1.1e-17 92.8 67 67.2
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 64 65.6
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 1.1e-17 92.8 64 67.2
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 1.4e-17 92.4 67 68.7
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 1.4e-17 92.4 67 68.7
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 1.4e-17 92.4 64 68.8
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 1.8e-17 92.0 65 69.2
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 2.4e-17 91.7 67 67.2
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 2.4e-17 91.7 64 68.8
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 2.4e-17 91.7 67 65.7
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 2.4e-17 91.7 64 67.2
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 3.1e-17 91.3 65 69.2
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 3.1e-17 91.3 65 69.2
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 3.1e-17 91.3 65 69.2
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 3.1e-17 91.3 65 69.2
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 3.1e-17 91.3 67 65.7
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 3.1e-17 91.3 64 64.1
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 5.3e-17 90.5 64 65.6
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 5.3e-17 90.5 64 65.6
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 5.3e-17 90.5 64 67.2
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 6.9e-17 90.1 65 67.7
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 6.9e-17 90.1 64 67.2
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 1.2e-16 89.4 64 68.8
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 2.0e-16 88.6 67 62.7
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 2.6e-16 88.2 64 64.1
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 3.4e-16 87.8 65 63.1
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 4.5e-16 87.4 64 65.6
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 5.8e-16 87.0 63 68.3
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 5.8e-16 87.0 64 62.5
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 5.8e-16 87.0 64 64.1
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 5.8e-16 87.0 67 58.2
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.8e-16 87.0 67 58.2
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.8e-16 87.0 67 58.2
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.8e-16 87.0 67 58.2
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.8e-16 87.0 67 58.2
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 9.9e-16 86.3 64 64.1
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 9.9e-16 86.3 65 60.0
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 9.9e-16 86.3 64 65.6
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 2.2e-15 85.1 64 62.5
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 2.2e-15 85.1 64 62.5
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 2.9e-15 84.7 64 59.4
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 3.8e-15 84.3 64 62.5
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 3.8e-15 84.3 67 56.7
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 4.9e-15 84.0 64 60.9
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 1.1e-14 82.8 67 55.2
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 1.4e-14 82.4 45 86.7
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 2.4e-14 81.6 64 60.9
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 3.2e-14 81.3 64 60.9
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 5.5e-14 80.5 86 51.2
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 5.5e-14 80.5 64 60.9
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 7.1e-14 80.1 64 57.8
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 9.3e-14 79.7 69 56.5
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 1.6e-13 79.0 56 71.4
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 2.1e-13 78.6 44 81.8
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 2.7e-13 78.2 67 59.7
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 1.6e-10 68.9 67 52.2
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 4.8e-10 67.4 58 56.9
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 2.4e-09 65.1 179 31.3
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 2.4e-09 65.1 67 49.3
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 1.5e-08 62.4 55 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 2.6e-08 61.6 63 46.0
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 2.6e-08 61.6 64 43.8
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 4.5e-08 60.8 41 70.7
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 1.7e-07 58.9 41 70.7
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 2.9e-07 58.2 58 48.3
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 2.5e-06 55.1 40 65.0
Cpa.g.sc11.95 Carica papaya HOM05D007530 ORTHO05D009556 2.5e-06 55.1 41 65.9
Dinv03021 Davidia involucrata HOM05D007530 ORTHO05D009556 7.1e-06 53.5 41 58.5


User provided reference genes

Program Settings