Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 6.3e-146 520.8 269 100.0
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.4e-121 439.9 292 81.2
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 3.2e-121 438.7 292 80.8
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.6e-111 404.4 313 73.2
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.9e-107 390.6 203 98.0
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.5e-99 366.7 296 67.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.1e-97 360.5 225 83.1
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.9e-97 359.8 295 67.5
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.0e-96 354.8 296 65.5
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 6.0e-96 354.8 292 67.1
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.8e-95 353.2 297 66.7
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.8e-95 353.2 297 66.7
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.3e-95 352.8 295 66.4
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.7e-95 351.3 295 66.1
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.5e-94 350.1 295 66.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.9e-94 349.7 293 65.2
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.9e-94 349.7 295 67.5
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.3e-94 349.0 294 65.3
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.3e-94 348.6 294 66.0
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 4.3e-94 348.6 297 66.3
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 9.6e-94 347.4 298 66.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.3e-93 347.1 295 64.4
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 4.8e-93 345.1 297 63.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.2e-93 344.7 298 64.8
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.2e-93 344.7 297 64.6
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 6.2e-93 344.7 296 62.5
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 8.1e-93 344.4 294 63.9
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.1e-92 344.0 293 64.5
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.4e-92 343.6 292 64.4
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.4e-92 343.6 291 65.6
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 4.0e-92 342.0 292 64.4
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.9e-92 341.3 295 64.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 6.9e-92 341.3 292 64.7
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.0e-92 340.9 294 64.6
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 9.0e-92 340.9 298 63.4
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.2e-91 340.5 297 66.0
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.5e-91 340.1 294 65.0
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.0e-91 339.7 292 63.7
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.0e-91 339.7 292 63.7
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.4e-91 339.0 296 63.9
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 4.5e-91 338.6 294 65.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 4.5e-91 338.6 292 64.0
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 4.5e-91 338.6 292 65.4
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 7.6e-91 337.8 296 64.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 9.9e-91 337.4 296 59.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.3e-90 337.0 294 62.9
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.7e-90 336.7 292 64.7
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.7e-90 336.7 292 64.0
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.2e-90 336.3 287 66.6
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.9e-90 335.9 291 63.6
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 3.8e-90 335.5 296 63.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.8e-90 335.5 291 63.2
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.8e-90 335.5 291 64.3
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.4e-90 334.7 294 65.0
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 8.4e-90 334.3 292 65.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.1e-89 334.0 292 64.0
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.4e-89 333.6 296 62.5
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.4e-89 333.6 298 63.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.9e-89 333.2 297 62.3
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.4e-89 332.8 291 65.3
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 2.4e-89 332.8 306 62.7
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 2.4e-89 332.8 292 63.0
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 5.5e-89 331.6 288 66.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 5.5e-89 331.6 292 63.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.2e-88 330.5 296 63.5
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.6e-88 330.1 291 63.6
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.1e-88 329.7 293 62.8
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.1e-88 329.7 293 62.8
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.7e-88 329.3 287 66.2
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 2.7e-88 329.3 292 64.0
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 2.7e-88 329.3 286 64.3
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.7e-88 329.3 281 64.8
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 3.5e-88 328.9 296 63.5
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 3.5e-88 328.9 296 61.8
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 4.6e-88 328.6 295 64.4
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.6e-88 328.6 293 62.1
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 6.0e-88 328.2 287 63.4
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 7.9e-88 327.8 292 63.7
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.0e-87 327.4 289 64.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.0e-87 327.4 289 64.0
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.0e-87 327.4 286 63.6
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.3e-87 327.0 282 64.2
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.3e-87 327.0 315 59.7
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.8e-87 326.6 291 62.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.3e-87 326.2 285 62.8
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.3e-87 326.2 288 64.2
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 3.0e-87 325.9 286 63.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 3.0e-87 325.9 297 64.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.0e-87 325.9 293 63.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 3.9e-87 325.5 216 79.2
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 3.9e-87 325.5 298 59.4
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 5.1e-87 325.1 303 63.4
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 6.7e-87 324.7 297 62.6
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.1e-86 323.9 284 64.8
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.1e-86 323.9 230 71.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.5e-86 323.6 286 62.2
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 4.3e-86 322.0 289 63.3
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 4.3e-86 322.0 295 62.4
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 4.3e-86 322.0 289 63.3
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.6e-86 321.6 285 64.9
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.1e-85 319.7 292 62.0
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.8e-85 319.3 288 61.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 4.8e-85 318.5 264 66.7
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 6.2e-85 318.2 286 61.2
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.4e-84 317.0 294 58.8
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.8e-84 316.6 298 61.1
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 3.1e-84 315.8 348 54.3
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 6.9e-84 314.7 285 62.5
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.2e-83 313.9 310 59.4
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.5e-83 313.5 258 64.3
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.0e-83 313.2 300 58.7
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.5e-83 312.0 272 62.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.5e-83 312.0 272 62.5
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 5.8e-83 311.6 292 60.3
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 5.8e-83 311.6 290 59.0
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.2e-82 309.7 344 54.9
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 3.8e-82 308.9 354 54.2
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.8e-82 308.9 230 69.6
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.8e-82 308.9 222 72.5
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.4e-81 307.0 330 55.8
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.2e-81 305.8 285 61.8
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 3.2e-81 305.8 342 55.0
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 7.9e-80 301.2 296 59.1
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-79 300.4 297 60.3
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 5.1e-79 298.5 280 61.4
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 8.7e-79 297.7 256 64.1
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 8.7e-79 297.7 284 60.2
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-71 273.9 287 57.1
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-68 263.8 199 70.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.0e-66 255.4 216 58.8
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.4e-65 253.8 217 57.1
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 9.4e-65 251.1 293 52.6
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 6.1e-64 248.4 201 61.7
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 3.9e-63 245.7 216 59.7
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.1e-63 245.4 231 61.0
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.8e-61 239.6 229 61.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 3.7e-61 239.2 188 68.1
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 6.3e-61 238.4 261 54.0
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-60 237.7 254 53.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 4.5e-59 232.3 201 56.2
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.6e-48 197.2 185 59.5
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 6.1e-48 195.3 218 47.2
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.5e-46 190.7 196 53.1
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.8e-45 186.4 225 46.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.4e-39 167.5 214 43.0
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 9.1e-36 154.8 152 53.3
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.9e-35 152.1 180 48.3
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.0e-31 141.4 208 40.4
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.9e-25 120.6 146 47.9
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 8.3e-21 105.1 70 77.1
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.2e-20 101.7 64 84.4
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.0e-19 100.5 59 84.7
Nitab4.5_0001019g0110 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.0e-15 86.3 50 92.0
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.6e-11 74.3 119 42.9
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 2.3e-10 70.5 262 31.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.2e-08 64.7 71 53.5


User provided reference genes

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