Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.9e-211 738.4 401 100.0
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 9.0e-205 716.8 394 97.7
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.0e-171 607.1 424 78.3
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 6.1e-145 518.1 424 69.1
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.9e-138 496.5 424 67.2
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.7e-134 483.4 425 65.4
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.3e-131 473.8 424 60.8
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 4.7e-129 465.3 415 59.8
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 1.5e-127 460.3 436 61.5
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.2e-125 451.1 429 58.3
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.7e-123 446.8 425 57.9
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-122 443.7 442 56.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 5.6e-122 441.8 424 56.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 9.5e-122 441.0 424 58.0
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.1e-116 423.3 428 54.2
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.0e-115 421.0 425 54.8
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 4.3e-114 415.6 425 53.9
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 7.3e-114 414.8 425 55.5
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.8e-113 412.9 424 54.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.2e-113 411.8 425 55.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.1e-112 411.0 425 54.6
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 3.1e-112 409.5 391 58.1
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 2.6e-111 406.4 425 54.4
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 9.9e-111 404.4 424 53.3
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 3.8e-110 402.5 376 58.0
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.4e-109 400.6 425 52.0
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.1e-106 391.0 424 51.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.1e-106 391.0 433 56.6
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.9e-106 390.2 530 44.7
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.9e-106 390.2 425 50.6
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.5e-106 389.8 424 54.0
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.2e-105 387.5 425 50.4
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.8e-104 383.6 426 51.2
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.4e-104 383.3 424 52.8
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 8.9e-104 381.3 425 49.4
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.6e-103 379.8 424 47.6
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 5.8e-103 378.6 425 51.3
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 2.9e-102 376.3 425 50.6
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 9.3e-101 371.3 422 49.1
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.1e-100 370.2 427 48.9
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.3e-99 367.5 434 50.7
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 5.1e-99 365.5 424 51.2
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 6.6e-99 365.2 426 50.5
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 8.7e-99 364.8 426 49.5
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 8.7e-99 364.8 593 40.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.5e-98 363.2 425 47.8
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.6e-98 362.1 424 48.1
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 7.3e-98 361.7 464 45.9
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 9.6e-98 361.3 436 48.2
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.1e-96 357.8 425 50.4
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-96 357.5 425 48.0
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 1.4e-96 357.5 373 53.6
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.9e-96 355.1 415 51.3
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.5e-95 354.0 423 48.5
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 2.0e-95 353.6 425 46.8
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.0e-95 353.6 450 46.0
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-94 350.9 328 60.1
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 2.2e-94 350.1 424 47.4
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.4e-94 348.6 415 49.6
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.4e-94 348.2 425 48.7
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 7.1e-93 345.1 423 46.6
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 7.1e-93 345.1 427 47.5
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.1e-92 343.6 425 47.3
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.0e-91 339.7 428 45.1
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 3.0e-91 339.7 429 44.5
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 5.1e-91 339.0 425 45.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 8.7e-91 338.2 424 46.0
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-90 337.4 431 47.8
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.5e-90 336.7 429 45.7
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 4.3e-90 335.9 437 43.5
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 7.4e-90 335.1 425 44.2
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-89 334.0 429 44.1
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 3.1e-88 329.7 366 49.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 6.9e-88 328.6 424 43.9
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.5e-87 327.4 425 44.5
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.0e-87 327.0 451 43.7
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 2.6e-87 326.6 425 43.8
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.8e-86 322.8 446 43.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.9e-85 320.5 425 46.1
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.4e-85 320.1 428 43.9
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.4e-85 320.1 429 43.6
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 3.2e-85 319.7 424 43.9
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 5.5e-85 318.9 423 44.4
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 9.3e-85 318.2 432 45.6
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 9.3e-85 318.2 434 44.0
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 5.1e-83 312.4 441 44.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-82 311.2 441 44.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 1.1e-82 311.2 441 44.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.6e-82 308.9 438 45.0
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 2.1e-81 307.0 378 47.6
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.2e-79 301.2 425 44.0
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.5e-79 300.8 425 42.8
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.0e-79 300.4 448 42.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 4.5e-79 299.3 426 43.4
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 5.8e-79 298.9 392 44.6
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.2e-78 297.0 303 52.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-77 294.7 483 39.5
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 7.1e-77 292.0 420 42.9
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 9.3e-77 291.6 233 63.5
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.4e-74 282.0 425 41.4
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 6.3e-73 278.9 423 40.9
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.6e-71 273.5 345 47.8
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 5.9e-71 272.3 382 44.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 7.6e-71 271.9 352 43.5
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.3e-70 271.2 379 43.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.4e-69 267.7 324 47.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.6e-68 264.2 396 40.7
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.6e-63 246.9 383 42.0
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.1e-61 241.5 433 39.7
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.9e-61 240.7 423 37.1
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 4.2e-61 239.6 404 40.3
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.1e-59 232.6 597 29.5
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 6.7e-59 232.3 287 46.0
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 7.4e-58 228.8 218 54.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 7.4e-58 228.8 336 44.3
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.7e-57 227.6 424 38.0
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.8e-56 224.2 422 35.1
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.3e-56 222.6 206 53.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.8e-49 200.3 415 32.5
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 3.1e-48 196.8 168 64.9
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.0e-47 194.1 252 44.8
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 6.5e-46 189.1 289 38.1
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.5e-45 187.2 417 31.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 2.3e-43 180.6 206 45.6
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 2.6e-42 177.2 294 40.5
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.0e-38 165.2 394 32.7
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.7e-38 164.5 178 53.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 4.7e-36 156.4 161 50.9
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 7.5e-34 149.1 115 75.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 2.2e-33 147.5 339 29.8
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.1e-32 145.2 343 34.1
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-32 144.8 216 46.8
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 6.5e-30 136.0 415 27.5
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 4.2e-29 133.3 204 36.3
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.2e-26 125.2 409 25.2
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 3.8e-22 110.2 169 42.6
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.5e-21 108.2 143 45.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.6e-21 106.3 76 64.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.2e-20 105.1 97 47.4
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.8e-20 104.0 76 63.2
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.6e-20 103.6 374 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 8.0e-20 102.4 233 31.8
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.5e-18 98.2 124 49.2
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 2.0e-18 97.8 142 43.7
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.1e-11 75.5 206 26.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-11 73.6 85 48.2
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 6.8e-11 72.8 61 72.1
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 8.3e-09 65.9 155 29.0
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 1.4e-08 65.1 83 36.1
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.2e-07 62.0 84 42.9
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 7.8e-07 59.3 65 50.8
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-06 58.9 44 70.5
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.3e-06 58.5 44 63.6
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 1.7e-06 58.2 179 23.5
MBI08_g15045_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 6.6e-06 56.2 84 42.9


User provided reference genes

Program Settings