Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.1e-84 316.6 157 100.0
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.0e-72 274.2 185 79.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.2e-64 250.0 195 70.3
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.2e-64 250.0 195 70.3
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 4.6e-64 248.1 195 69.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 3.9e-63 245.0 195 69.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.1e-60 235.0 169 76.9
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.2e-56 223.4 198 59.1
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.9e-54 216.1 197 58.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.2e-53 212.6 195 57.4
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.8e-53 212.2 198 57.6
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.8e-53 212.2 197 58.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 6.3e-53 211.1 198 60.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 6.3e-53 211.1 174 66.1
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.4e-52 209.1 200 57.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 9.1e-52 207.2 198 57.1
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.9e-51 204.5 197 55.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.2e-50 202.6 198 56.1
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.5e-49 199.1 195 55.9
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 5.5e-49 198.0 208 52.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.2e-48 196.8 207 53.1
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.6e-48 196.4 198 55.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.6e-48 196.4 197 54.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.1e-48 196.1 196 54.1
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.1e-48 196.1 197 54.3
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 7.9e-48 194.1 200 55.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.4e-47 193.4 199 52.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.8e-47 193.0 197 54.3
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.0e-47 192.2 203 52.2
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.9e-47 191.8 203 52.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 5.1e-47 191.4 199 55.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.0e-46 189.5 188 55.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.6e-46 189.1 198 53.0
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.6e-46 189.1 199 53.3
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.6e-46 189.1 203 51.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 7.4e-46 187.6 200 53.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 9.7e-46 187.2 199 52.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.7e-45 186.4 197 53.3
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.8e-45 185.7 197 50.3
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.7e-45 185.3 206 51.0
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 4.8e-45 184.9 192 53.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 8.2e-45 184.1 197 52.3
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-44 183.7 206 51.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.8e-44 183.0 197 52.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.8e-44 183.0 195 51.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.4e-44 182.6 196 52.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.1e-44 182.2 166 59.6
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.3e-44 181.4 181 53.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 6.9e-44 181.0 200 51.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 6.9e-44 181.0 192 52.6
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 6.9e-44 181.0 195 51.8
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 6.9e-44 181.0 191 52.4
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 6.9e-44 181.0 196 50.5
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-43 180.3 206 50.0
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.2e-43 180.3 192 54.2
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-43 179.9 171 57.3
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-43 179.5 196 52.6
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.6e-43 179.1 172 55.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 4.5e-43 178.3 199 52.3
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.5e-43 178.3 192 53.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.5e-43 178.3 195 51.3
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.9e-43 177.9 198 50.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.0e-42 177.2 200 50.5
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.3e-42 176.8 198 51.0
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.3e-42 176.8 189 52.4
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.3e-42 176.8 192 50.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-42 176.8 199 48.7
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-42 176.8 194 50.5
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.2e-42 176.0 192 50.5
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.2e-42 176.0 197 49.7
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.1e-41 173.7 198 47.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.9e-41 172.9 197 50.3
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 3.2e-41 172.2 189 53.4
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.5e-41 171.4 191 51.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.5e-41 171.4 194 49.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 9.4e-41 170.6 198 50.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.2e-40 170.2 198 50.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.2e-40 170.2 212 48.6
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.7e-40 169.1 213 49.8
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 7.9e-40 167.5 198 49.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 7.9e-40 167.5 167 57.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.0e-39 167.2 198 47.5
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.4e-39 166.8 193 50.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.4e-39 166.8 257 42.4
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 2.3e-39 166.0 212 48.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.3e-39 166.0 190 49.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 3.9e-39 165.2 186 52.2
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.9e-39 165.2 172 53.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 6.7e-39 164.5 217 47.5
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.8e-39 164.1 196 49.0
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.8e-39 164.1 195 48.7
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.1e-38 163.7 173 52.0
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.1e-38 163.7 181 49.7
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.3e-38 162.2 199 46.7
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.8e-37 159.1 195 49.7
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.8e-37 159.1 195 49.7
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.8e-37 158.3 195 49.7
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.8e-37 158.3 195 49.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.3e-37 157.9 195 47.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-36 157.1 197 48.7
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.1e-36 157.1 196 49.5
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.4e-36 156.0 170 53.5
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.4e-36 156.0 193 46.6
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 5.3e-36 154.8 191 47.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 9.1e-36 154.1 199 49.2
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.2e-35 153.7 199 46.7
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-35 153.7 197 47.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.0e-35 152.9 187 47.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 4.5e-35 151.8 198 46.0
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.9e-35 151.4 194 47.4
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 7.7e-35 151.0 187 47.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.0e-34 150.6 195 47.7
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 2.2e-34 149.4 299 36.5
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 8.5e-34 147.5 165 48.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.2e-33 145.6 160 53.8
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 7.2e-33 144.4 198 44.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.6e-32 143.3 197 43.7
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.1e-32 142.9 197 47.7
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.1e-32 141.4 199 42.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.8e-29 132.5 140 50.7
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.8e-29 131.7 171 46.2
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.0e-26 121.7 186 40.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 5.2e-23 111.7 156 43.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.1e-20 104.0 108 49.1
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.1e-20 102.1 81 66.7
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.0e-19 99.8 154 40.3
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.7e-19 99.4 138 43.5
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.7e-19 99.4 138 43.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.5e-19 99.0 170 37.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.7e-19 97.8 79 60.8
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.7e-18 96.7 79 59.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-18 96.3 101 48.5
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-18 94.7 98 49.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 5.5e-17 91.7 152 38.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 5.5e-17 91.7 94 52.1
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.6e-16 89.0 76 55.3
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.7e-16 88.6 70 60.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.7e-13 80.1 124 41.1
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 8.3e-13 77.8 142 34.5
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.1e-08 63.2 45 68.9
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 6.1e-08 61.6 121 37.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 8.0e-08 61.2 111 29.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.3e-07 59.7 150 29.3
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 6.8e-07 58.2 91 38.5
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.2e-06 57.4 111 36.0
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.2e-06 57.4 64 48.4
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 5.8e-06 55.1 112 36.6
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.5e-06 54.7 54 50.0
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 9.8e-06 54.3 90 36.7


User provided reference genes

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