Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-33 144.8 72 100.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.8e-31 138.7 74 95.9
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 8.4e-29 129.8 75 92.0
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 8.4e-29 129.8 75 92.0
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.9e-28 128.6 75 90.7
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.2e-28 127.5 75 89.3
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.7e-19 98.2 68 73.5
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.6e-19 97.4 69 76.8
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.0e-18 96.3 68 75.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.8e-18 95.5 70 72.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.3e-18 95.1 69 73.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.3e-18 95.1 69 73.9
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 3.0e-18 94.7 68 73.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 3.9e-18 94.4 68 73.5
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.9e-18 94.4 73 67.1
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.9e-18 94.4 69 75.4
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 6.7e-18 93.6 68 67.6
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 6.7e-18 93.6 69 72.5
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 8.7e-18 93.2 68 73.5
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 2.5e-17 91.7 67 70.1
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 2.5e-17 91.7 69 69.6
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.5e-17 91.7 68 75.0
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.5e-17 91.7 69 69.6
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.3e-17 90.9 67 71.6
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.3e-17 90.9 69 72.5
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.7e-17 90.5 72 70.8
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 5.7e-17 90.5 69 71.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 7.4e-17 90.1 69 71.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 7.4e-17 90.1 70 68.6
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.4e-17 90.1 68 67.6
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 9.7e-17 89.7 69 69.6
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 9.7e-17 89.7 69 69.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 9.7e-17 89.7 69 71.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 9.7e-17 89.7 69 73.9
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.3e-16 89.4 68 70.6
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.3e-16 89.4 72 65.3
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.6e-16 89.0 67 70.1
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 2.2e-16 88.6 66 72.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 2.2e-16 88.6 69 69.6
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.8e-16 88.2 69 66.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.8e-16 88.2 69 71.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.7e-16 87.8 69 69.6
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.7e-16 87.8 69 71.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.7e-16 87.8 67 68.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.8e-16 87.4 69 66.7
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 4.8e-16 87.4 67 68.7
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 4.8e-16 87.4 68 72.1
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 6.3e-16 87.0 69 68.1
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 6.3e-16 87.0 69 69.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 6.3e-16 87.0 67 68.7
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 8.2e-16 86.7 67 68.7
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-15 86.3 74 62.2
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 69 65.2
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 68 64.7
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 71 66.2
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 66.7
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.4e-15 85.9 69 69.6
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.8e-15 85.5 69 65.2
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 2.4e-15 85.1 73 63.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.1e-15 84.7 70 67.1
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 4.1e-15 84.3 68 69.1
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.1e-15 84.3 68 69.1
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 4.1e-15 84.3 72 63.9
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 6.9e-15 83.6 70 67.1
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 9.0e-15 83.2 76 56.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 1.5e-14 82.4 68 63.2
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.5e-14 82.4 69 68.1
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.0e-14 82.0 67 61.2
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-14 82.0 69 59.4
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.6e-14 81.6 68 64.7
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.4e-14 81.3 71 62.0
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.4e-14 81.3 68 64.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.4e-14 81.3 68 64.7
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.4e-14 81.3 68 64.7
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 3.4e-14 81.3 69 65.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.4e-14 81.3 67 64.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.4e-14 81.3 71 62.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.4e-14 81.3 68 64.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 3.4e-14 81.3 76 60.5
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.9e-14 80.5 74 56.8
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.9e-14 80.5 68 64.7
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.9e-14 80.5 68 66.2
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 60.6
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 60.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 60.6
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 60.6
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.3e-13 79.3 81 59.3
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.3e-13 79.3 70 61.4
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-13 79.0 70 62.9
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-13 78.6 72 59.7
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-13 78.6 71 59.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-13 78.6 71 59.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.2e-13 78.6 71 59.2
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.2e-13 78.6 69 59.4
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.9e-13 78.2 69 58.0
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-13 78.2 71 59.2
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-13 78.2 71 59.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.9e-13 78.2 72 58.3
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.8e-13 77.8 76 56.6
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.8e-13 77.8 71 59.2
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.0e-13 77.4 74 56.8
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 5.0e-13 77.4 71 59.2
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 5.0e-13 77.4 70 64.3
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 6.5e-13 77.0 74 56.8
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 6.5e-13 77.0 73 57.5
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 6.5e-13 77.0 66 63.6
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-13 76.6 75 56.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 8.5e-13 76.6 67 62.7
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.5e-13 76.6 71 56.3
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-12 76.3 75 56.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-12 76.3 75 56.0
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.9e-12 75.5 75 56.0
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.5e-12 75.1 67 61.2
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.5e-12 75.1 75 56.0
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 2.5e-12 75.1 67 56.7
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-12 74.7 75 54.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.2e-12 74.7 75 54.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.2e-12 74.7 71 54.9
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.5e-12 73.9 78 52.6
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 7.2e-12 73.6 75 54.7
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-12 73.2 76 53.9
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 9.4e-12 73.2 75 54.7
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 9.4e-12 73.2 74 58.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-11 72.8 75 54.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-11 72.0 76 56.6
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-11 72.0 76 56.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 4.6e-11 70.9 82 50.0
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.1e-11 70.5 67 52.2
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.9e-11 70.1 68 58.8
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.4e-10 69.3 77 51.9
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.4e-10 69.3 67 55.2
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.9e-10 67.8 78 51.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.1e-09 66.2 77 50.6
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.5e-09 65.9 80 52.5
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.0e-09 65.5 58 62.1
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.3e-09 64.3 65 52.3
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 3.7e-08 61.2 64 54.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 5.3e-07 57.4 73 49.3
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 5.9e-06 53.9 92 40.2


User provided reference genes

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