Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.0e-107 392.5 306 100.0
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.7e-97 358.6 311 94.2
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 9.7e-50 201.4 327 66.7
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.9e-47 192.2 263 74.9
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.5e-45 186.8 263 72.2
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 7.2e-45 185.3 272 69.1
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 7.2e-45 185.3 321 66.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 6.1e-44 182.2 262 69.8
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.4e-43 181.0 264 68.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 3.0e-43 179.9 268 70.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 3.9e-43 179.5 332 64.2
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 6.7e-43 178.7 265 66.4
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 6.7e-43 178.7 265 66.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.7e-43 178.7 273 67.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-42 177.9 263 70.7
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.0e-42 177.2 273 69.2
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 3.3e-42 176.4 258 69.0
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.3e-42 176.4 274 67.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 4.4e-42 176.0 267 71.2
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.4e-42 176.0 261 58.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 5.7e-42 175.6 272 68.8
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.7e-42 175.6 274 67.2
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.7e-42 175.6 272 68.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.4e-42 175.3 315 63.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 9.7e-42 174.9 264 70.1
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-41 174.1 276 69.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.2e-41 173.7 264 67.0
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.2e-41 171.8 263 70.3
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.1e-40 171.4 273 67.0
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.4e-40 171.0 264 72.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.5e-39 167.5 264 64.4
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 3.5e-39 166.4 262 70.6
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 3.5e-39 166.4 262 66.0
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 5.9e-39 165.6 309 62.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.0e-38 164.9 181 59.1
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.0e-38 164.9 314 59.9
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.0e-38 164.9 264 67.4
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.0e-38 164.9 264 69.3
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.2e-38 163.7 179 59.8
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.8e-38 162.9 180 59.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 5.0e-38 162.5 282 63.8
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 6.5e-38 162.2 264 56.4
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 8.5e-38 161.8 267 66.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.2e-37 159.8 265 68.3
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 5.5e-37 159.1 264 68.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.5e-37 159.1 269 65.8
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 9.4e-37 158.3 181 59.1
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 8.0e-36 155.2 267 69.3
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.0e-35 154.8 318 63.5
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.0e-35 154.8 275 66.2
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.0e-35 154.8 274 65.3
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.8e-35 154.1 267 64.0
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.9e-35 152.9 252 68.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.9e-35 152.9 269 68.4
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 8.8e-35 151.8 266 66.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.1e-34 151.4 265 66.4
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 2.0e-34 150.6 180 56.1
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.6e-34 150.2 266 66.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.6e-34 150.2 274 64.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.3e-34 149.8 269 65.4
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.3e-34 149.8 270 65.9
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.4e-34 149.4 268 64.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.4e-34 149.4 266 66.9
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 4.4e-34 149.4 266 66.9
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 4.4e-34 149.4 211 48.8
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.7e-34 149.1 262 66.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.4e-34 148.7 280 63.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 7.4e-34 148.7 273 64.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 9.7e-34 148.3 266 65.0
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.8e-33 146.7 265 65.3
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.7e-33 146.4 318 56.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.7e-33 146.4 307 60.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 4.8e-33 146.0 263 66.2
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.8e-33 146.0 307 62.2
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.3e-33 145.6 178 55.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.2e-33 145.2 266 66.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.8e-32 144.1 279 63.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 9.1e-32 141.7 263 62.0
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.2e-31 141.4 182 53.8
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 5.9e-31 139.0 313 55.0
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.0e-30 138.3 320 56.6
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.7e-30 137.5 268 63.8
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 3.8e-30 136.3 271 63.8
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.9e-29 134.0 262 62.6
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.5e-29 133.7 294 56.5
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 3.2e-29 133.3 181 50.8
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.2e-29 133.3 266 48.1
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 3.2e-29 133.3 268 63.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.2e-29 133.3 262 61.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.2e-29 132.9 270 60.0
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.5e-29 132.5 269 61.7
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 7.2e-29 132.1 269 64.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 7.2e-29 132.1 277 61.4
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.6e-28 131.0 267 61.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.7e-28 130.2 190 49.5
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 6.1e-28 129.0 210 46.7
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.0e-27 128.3 275 61.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.4e-27 127.9 267 62.5
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.8e-27 127.5 282 61.7
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.3e-27 127.1 301 56.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 5.2e-27 125.9 280 62.1
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 8.8e-27 125.2 182 51.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-26 124.4 270 63.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.5e-26 124.4 175 49.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-26 123.6 259 37.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.4e-26 122.9 264 60.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.8e-26 121.7 228 67.5
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.3e-25 121.3 275 58.5
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 2.8e-25 120.2 262 59.5
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.7e-25 119.8 289 59.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 6.3e-25 119.0 278 60.8
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.4e-24 117.9 269 58.7
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 2.4e-24 117.1 306 45.1
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 5.4e-24 115.9 266 60.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 7.0e-24 115.5 274 59.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.2e-23 114.8 260 60.8
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-23 114.4 185 49.2
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.0e-23 114.0 268 59.0
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.0e-23 114.0 273 57.9
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.0e-23 114.0 260 50.8
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 2.0e-23 114.0 271 59.4
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 3.5e-23 113.2 277 59.6
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 5.9e-23 112.5 275 56.7
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 5.9e-23 112.5 275 56.7
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 5.9e-23 112.5 275 56.7
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 7.7e-23 112.1 267 60.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 7.7e-23 112.1 310 56.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.3e-22 111.3 166 50.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 2.9e-22 110.2 265 57.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.9e-22 110.2 265 57.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.8e-22 109.8 261 57.1
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.8e-22 109.8 272 58.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 8.5e-22 108.6 253 60.9
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-21 108.2 261 48.3
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.1e-21 108.2 261 48.3
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.1e-21 108.2 167 80.2
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.5e-21 107.1 279 58.4
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.2e-21 106.7 265 60.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 9.4e-21 105.1 275 56.0
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.6e-20 104.4 269 58.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.6e-20 103.2 272 54.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 8.0e-20 102.1 276 55.4
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 8.0e-20 102.1 269 55.0
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.8e-19 100.9 275 55.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.8e-19 100.9 264 50.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.6e-18 97.1 274 54.7
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.6e-18 97.1 223 39.0
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.7e-17 94.4 261 43.7
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.8e-17 93.6 182 42.3
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.7e-17 93.2 129 52.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 3.7e-17 93.2 176 37.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.1e-16 91.7 259 53.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 7.0e-16 89.0 142 49.3
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-14 85.1 261 51.3
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.0e-14 85.1 261 54.4
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.1e-12 77.4 301 50.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 7.5e-10 68.9 224 40.2
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.2e-09 67.4 264 39.0
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 9.2e-08 62.0 261 49.0
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.0e-07 60.8 41 73.2
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 4.6e-07 59.7 76 55.3
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.8e-07 58.9 76 55.3
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.7e-06 57.8 68 52.9
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.9e-06 57.0 158 39.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-06 57.0 233 32.2


User provided reference genes

Program Settings