Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.3e-188 662.9 332 100.0
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.2e-185 652.1 332 97.9
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 9.5e-176 620.2 332 93.7
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 2.3e-174 615.5 332 93.1
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 5.2e-174 614.4 332 92.2
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.4e-171 605.5 332 92.2
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 7.5e-157 557.4 334 85.0
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.1e-155 553.5 315 83.8
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.2e-154 550.1 337 81.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.3e-153 546.6 335 79.4
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.9e-152 542.7 317 83.6
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.4e-150 536.6 325 82.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.8e-150 536.2 351 78.3
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.4e-149 531.9 333 78.7
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.4e-149 531.9 334 80.2
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 5.8e-149 531.2 328 79.6
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 9.9e-149 530.4 315 81.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 2.2e-148 529.3 328 80.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.2e-148 529.3 320 81.9
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.8e-148 528.5 317 82.0
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.1e-147 526.9 381 71.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.9e-147 526.2 318 82.7
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.9e-147 526.2 316 81.3
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.4e-147 525.8 313 81.2
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.4e-147 525.8 314 80.9
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.2e-147 525.4 310 81.9
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 3.2e-147 525.4 315 80.6
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.1e-147 525.0 322 81.7
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.4e-147 524.6 312 80.4
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 5.4e-147 524.6 314 80.9
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 7.1e-147 524.2 314 81.2
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.1e-146 522.7 311 81.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.7e-146 522.3 314 79.3
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.7e-146 522.3 315 80.0
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 4.6e-146 521.5 317 77.9
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 6.0e-146 521.2 317 78.5
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 6.0e-146 521.2 321 79.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.0e-145 520.4 311 81.7
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.0e-145 520.4 358 74.6
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.7e-145 519.6 328 76.8
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 6.6e-145 517.7 321 79.1
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 6.6e-145 517.7 315 79.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 3.3e-144 515.4 315 78.4
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.3e-144 515.0 308 81.2
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 5.6e-144 514.6 314 79.6
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 7.3e-144 514.2 300 84.3
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.2e-143 513.5 319 78.4
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 4.7e-143 511.5 313 78.9
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.4e-142 510.0 339 74.0
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.4e-142 509.2 347 73.2
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 5.2e-142 508.1 380 71.3
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 5.2e-142 508.1 380 71.3
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 2.0e-141 506.1 293 82.3
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 4.4e-141 505.0 315 78.7
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.8e-141 504.6 316 78.2
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.9e-140 502.3 338 73.7
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 7.1e-139 497.7 320 76.2
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.2e-138 496.9 314 77.4
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 4.6e-138 495.0 288 81.9
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.0e-137 493.8 321 76.0
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.0e-137 493.8 320 76.2
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.3e-137 492.7 311 77.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.9e-137 491.9 311 76.8
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 8.7e-137 490.7 314 76.8
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.5e-136 490.0 317 77.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.5e-136 490.0 329 74.5
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 4.3e-136 488.4 321 75.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 4.3e-136 488.4 303 77.6
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.1e-135 486.1 302 78.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.1e-135 486.1 303 77.6
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 5.3e-134 481.5 337 72.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 3.8e-132 475.3 333 72.1
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 8.4e-132 474.2 304 76.6
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 3.2e-131 472.2 306 75.8
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 4.6e-130 468.4 304 76.0
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 6.0e-130 468.0 321 72.6
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 6.0e-130 468.0 297 78.5
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.0e-129 467.2 306 73.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 5.1e-129 464.9 323 70.6
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-128 463.8 275 81.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.3e-127 460.3 343 69.4
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.8e-127 458.4 385 63.6
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 6.9e-126 454.5 295 78.3
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 9.9e-125 450.7 325 70.2
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.9e-123 446.4 345 67.2
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.1e-119 433.0 274 77.4
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.0e-117 426.4 278 74.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.5e-115 418.3 269 76.6
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.5e-112 409.5 308 66.9
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.4e-110 403.7 300 66.3
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 5.9e-109 398.3 268 76.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 8.5e-108 394.4 267 75.3
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.6e-106 390.2 240 78.8
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 3.0e-105 386.0 257 74.7
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.1e-102 377.5 299 60.5
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.9e-99 366.7 231 77.9
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 4.2e-99 365.5 329 55.6
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.2e-99 364.8 276 69.6
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.2e-95 353.2 219 76.3
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.2e-95 353.2 205 84.9
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.2e-93 347.4 331 57.7
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.6e-93 346.3 204 81.4
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.5e-93 345.5 273 65.6
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.8e-87 325.5 313 57.8
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.1e-86 322.8 318 56.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.6e-85 320.5 200 79.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.0e-85 320.1 196 81.6
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 8.5e-84 314.7 349 50.1
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.5e-72 277.3 216 63.0
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.2e-67 259.2 148 85.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 7.0e-62 241.9 171 71.9
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 3.8e-60 236.1 285 47.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 2.1e-58 230.3 133 82.0
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.9e-54 217.2 244 50.8
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 3.0e-52 209.9 118 87.3
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.5e-51 207.6 120 81.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 6.2e-50 202.2 336 38.4
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.2e-48 198.0 147 63.9
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.5e-48 197.6 138 68.8
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 7.5e-48 195.3 198 56.6
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.6e-45 187.6 120 73.3
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 6.0e-45 185.7 127 72.4
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 6.0e-45 185.7 127 72.4
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 6.2e-42 175.6 123 69.9
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.8e-41 174.1 162 63.6
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.6e-37 161.0 153 61.4
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-36 157.5 87 87.4
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 3.8e-31 139.8 154 52.6
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.2e-26 124.8 93 63.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.2e-22 110.2 116 53.4
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.0e-21 105.9 65 75.4
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.5e-19 101.3 67 70.1
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 3.6e-18 96.7 65 76.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.4e-17 94.0 77 66.2
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.2e-15 87.4 81 53.1
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.9e-15 86.3 55 72.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 3.2e-14 83.6 110 43.6
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.8e-12 77.8 42 83.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 4.3e-11 73.2 54 66.7
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 8.1e-10 68.9 36 86.1
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 5.3e-09 66.2 141 34.0
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 4.5e-08 63.2 66 53.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 2.9e-07 60.5 36 80.6


User provided reference genes

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