Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2285.4 1179 100.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2218.4 1161 99.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 2176.0 1161 95.9
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 2172.1 1161 95.8
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 2155.9 1210 93.2
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 2148.6 1161 95.3
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2030.8 1164 89.3
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2029.6 1164 89.1
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2004.2 1165 88.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2003.4 1165 88.5
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1167 87.7
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1982.2 1166 87.4
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1979.1 1167 86.5
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1978.8 1168 87.2
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1971.4 1170 86.5
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1967.6 1171 86.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1167 86.5
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1168 86.4
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1961.0 1160 86.4
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1955.6 1168 86.0
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1163 85.7
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1164 87.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1172 85.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1946.0 1176 85.7
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1944.5 1176 85.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1938.3 1164 85.4
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1164 84.0
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1171 85.6
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1164 84.8
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1163 84.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1929.8 1164 83.5
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1927.9 1162 85.5
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1173 85.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1174 84.7
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1162 85.0
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1160 85.0
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1167 85.0
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1166 83.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1166 84.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1164 83.5
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1166 83.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1914.8 1168 84.3
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1912.9 1170 84.3
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1170 84.2
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1203 82.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1908.6 1200 82.6
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1907.5 1125 87.2
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1907.5 1164 83.2
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1170 83.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1164 84.3
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1164 83.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1164 84.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1173 83.1
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1168 83.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1164 82.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1897.5 1097 87.1
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1895.6 1162 83.9
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1894.4 1165 83.4
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1172 83.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1889.0 1165 83.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1887.8 1163 82.9
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1887.5 1168 83.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1886.3 1173 82.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1197 82.5
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1883.6 1175 82.3
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1174 82.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1879.8 1165 83.0
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1166 82.1
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1166 82.4
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1177 81.3
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1867.4 1155 84.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1863.6 1164 82.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1862.8 1166 82.2
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1862.4 1165 82.4
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1160 82.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1173 81.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1169 81.8
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1856.3 1169 82.0
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1855.1 1172 81.6
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1854.0 1167 82.1
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1854.0 1167 82.1
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1852.8 1165 81.6
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1851.6 1167 82.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1851.6 1160 82.0
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1848.6 1166 80.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1848.2 1184 80.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1838.2 1326 75.0
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1830.5 1174 81.1
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1822.0 1096 83.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1820.8 1174 80.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1783.1 1194 79.0
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1746.9 1167 75.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1719.9 1068 82.1
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1708.3 1164 75.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1677.1 1160 75.3
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1645.6 994 85.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1625.1 1164 71.1
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1620.5 1163 70.3
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1596.3 1148 74.7
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1536.2 940 82.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1471.1 1160 65.8
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1463.4 838 88.8
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1456.4 1159 64.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1403.3 1162 62.6
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1393.6 838 84.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1392.5 1163 61.8
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1379.8 1177 61.0
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1352.0 799 85.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1296.2 797 81.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1221.5 784 78.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1186.0 695 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1110.9 920 61.2
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.5e-305 1051.6 1192 47.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.0e-297 1026.2 576 91.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.3e-293 1012.7 653 79.5
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.2e-285 984.9 745 71.8
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.9e-275 951.8 601 82.9
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.0e-272 942.6 546 88.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.3e-271 937.9 590 82.2
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.6e-255 885.2 519 82.7
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.4e-250 870.5 625 72.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.5e-220 769.2 480 82.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.9e-218 763.8 465 80.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.5e-204 717.6 438 86.3
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.6e-148 531.6 357 77.6
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.2e-145 521.9 351 79.8
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 4.8e-113 413.7 378 56.6
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.4e-112 411.4 281 73.3
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.1e-90 339.3 195 86.7
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.6e-58 231.9 168 74.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 8.9e-51 206.8 143 76.9
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.0e-46 193.4 117 88.0
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.3e-38 165.6 87 93.1
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 7.3e-37 160.6 103 82.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 3.6e-36 158.3 109 78.0
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.5e-34 152.9 78 89.7
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.5e-34 152.9 96 85.4
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.2e-18 100.1 132 44.7
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.5e-18 99.8 132 45.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.3e-16 90.5 84 59.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.6e-15 89.7 98 63.3
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.3e-14 86.7 51 80.4
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.7e-14 86.3 51 80.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.3e-14 85.9 51 80.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 1.1e-11 77.0 335 27.8
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.0e-06 60.5 37 73.0


User provided reference genes

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