Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 6.2e-163 577.4 292 100.0
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 6.8e-162 573.9 292 99.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.3e-136 490.0 318 80.5
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 3.2e-135 485.3 318 79.6
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 5.5e-135 484.6 269 90.7
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 6.1e-102 374.8 276 69.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.7e-100 368.2 304 63.8
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.7e-100 368.2 304 63.8
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.7e-99 366.7 308 62.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 3.7e-99 365.5 307 63.2
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 8.5e-96 354.4 297 62.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.5e-96 354.4 298 62.4
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 2.5e-95 352.8 280 65.0
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.6e-94 350.1 306 62.7
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.7e-94 348.6 266 65.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.0e-93 347.4 315 58.7
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 5.2e-93 345.1 290 63.4
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.0e-92 343.2 310 61.0
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.6e-92 342.8 301 60.1
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 9.8e-92 340.9 301 58.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 6.3e-91 338.2 309 60.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.4e-90 337.0 310 60.6
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 4.1e-90 335.5 311 59.5
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.2e-89 334.0 304 59.9
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.2e-89 334.0 310 58.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.2e-89 334.0 293 61.1
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.7e-89 332.8 293 60.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 2.7e-89 332.8 286 59.8
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 7.7e-89 331.3 300 58.3
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 5.0e-88 328.6 288 58.3
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.1e-87 327.4 304 58.9
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 3.2e-87 325.9 293 60.1
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 9.5e-87 324.3 309 55.0
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.1e-86 323.2 311 56.6
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.1e-86 323.2 304 58.2
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.7e-86 322.8 281 59.1
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 8.0e-86 321.2 292 57.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.4e-85 320.5 300 55.3
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.8e-85 320.1 306 54.9
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.3e-85 319.7 312 57.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 8.8e-85 317.8 304 56.9
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 3.4e-84 315.8 299 57.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 4.4e-84 315.5 293 55.6
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 5.7e-84 315.1 308 54.9
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 5.7e-84 315.1 344 52.0
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 7.5e-84 314.7 291 56.7
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 7.5e-84 314.7 298 55.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 7.5e-84 314.7 296 56.4
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.3e-83 313.9 301 56.1
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.7e-83 313.5 305 55.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.7e-83 313.5 255 64.7
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.2e-83 313.2 290 56.9
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 4.9e-83 312.0 261 60.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 6.3e-83 311.6 297 55.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.3e-83 311.6 294 56.1
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 6.3e-83 311.6 305 55.4
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.1e-82 310.8 298 56.0
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.1e-82 310.8 301 57.5
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.4e-82 309.7 290 57.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.1e-82 309.3 270 59.6
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 5.4e-82 308.5 304 56.9
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 5.4e-82 308.5 291 57.7
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 7.0e-82 308.1 298 55.4
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 2.7e-81 306.2 259 59.1
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.9e-80 302.8 300 54.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 5.0e-80 302.0 303 55.1
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-79 300.1 279 56.3
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 4.3e-79 298.9 281 56.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 5.6e-79 298.5 279 55.6
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 7.3e-79 298.1 257 59.9
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 8.0e-78 294.7 311 54.0
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 8.0e-78 294.7 305 54.4
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.7e-75 287.0 241 61.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.2e-74 282.7 291 54.6
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 5.9e-73 278.5 279 54.1
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.5e-71 273.1 310 49.0
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 3.3e-71 272.7 300 50.7
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 4.7e-70 268.9 261 57.1
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 6.2e-70 268.5 407 42.3
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 6.2e-70 268.5 275 50.2
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 3.1e-69 266.2 294 48.0
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 6.8e-69 265.0 276 51.1
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.2e-67 260.0 161 79.5
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 4.9e-67 258.8 248 53.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.6e-65 253.8 315 46.7
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 5.0e-64 248.8 271 52.0
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.1e-63 247.7 268 47.4
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.5e-63 247.3 279 48.7
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 4.7e-62 242.3 297 46.8
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.2e-60 237.7 203 55.7
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.3e-59 234.2 284 49.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.2e-58 229.6 274 48.9
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.6e-57 227.3 279 48.0
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.7e-56 223.8 153 74.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.3e-56 223.4 152 76.3
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.0e-56 223.0 245 46.9
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.8e-52 208.8 256 48.8
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.9e-50 203.8 231 49.4
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.3e-48 197.6 269 42.8
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.3e-48 197.6 257 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 4.3e-47 192.6 289 38.8
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 9.6e-47 191.4 219 49.8
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.8e-45 187.2 131 71.0
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.4e-45 186.8 203 52.7
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.1e-40 169.1 211 46.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 4.8e-38 162.5 276 37.7
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.1e-37 159.8 105 74.3
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.5e-36 157.5 142 57.7
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.8e-36 155.6 191 42.4
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.1e-32 142.5 105 68.6
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 4.3e-31 139.4 148 51.4
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.1e-30 137.1 139 56.1
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 9.9e-28 128.3 131 54.2
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.2e-27 127.1 87 67.8
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-27 127.1 89 71.9
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 7.9e-25 118.6 107 59.8
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 8.2e-22 108.6 176 42.6
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 1.7e-19 100.9 143 41.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.6e-17 94.4 140 40.7
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-15 87.0 72 62.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 5.3e-13 79.3 83 54.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 5.0e-11 72.8 82 52.4
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.4e-10 71.2 87 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 9.3e-10 68.6 160 29.4
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.9e-07 60.8 51 54.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 9.7e-07 58.5 56 53.6
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-06 57.4 86 39.5
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-06 57.0 68 54.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.7e-06 56.6 167 24.6
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 6.3e-06 55.8 46 56.5
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 8.2e-06 55.5 42 61.9
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 8.2e-06 55.5 42 61.9
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 8.2e-06 55.5 90 34.4


User provided reference genes

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