Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.1e-162 575.5 508 100.0
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.3e-87 326.2 478 82.6
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 1.0e-43 182.2 148 60.1
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.3e-43 181.8 144 61.1
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 1.7e-43 181.4 148 59.5
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 1.5e-42 178.3 148 58.8
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.2e-41 175.3 144 60.4
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 1.6e-33 148.3 146 49.3
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 1.5e-31 141.7 143 48.3
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 2.6e-31 141.0 148 47.3
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 3.4e-31 140.6 142 46.5
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 3.4e-31 140.6 142 47.9
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.8e-29 134.8 141 44.7
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 7.0e-29 132.9 142 42.3
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 2.7e-28 131.0 131 47.3
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 7.8e-28 129.4 142 43.7
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 2.9e-27 127.5 146 45.9
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 5.0e-27 126.7 142 42.3
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 8.6e-27 125.9 145 46.9
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.5e-26 125.2 144 40.3
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 1.9e-26 124.8 144 41.0
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.9e-26 124.8 144 41.0
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.5e-26 124.4 144 40.3
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 3.6e-25 120.6 142 42.3
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.0e-24 119.0 148 39.9
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 2.3e-24 117.9 133 45.1
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 3.1e-24 117.5 148 39.9
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 8.9e-24 115.9 148 39.2
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 1.5e-23 115.2 142 42.3
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.0e-23 114.8 144 38.9
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 3.4e-23 114.0 128 43.8
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 7.5e-23 112.8 144 38.9
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.3e-22 112.1 144 38.2
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 1.7e-22 111.7 143 42.0
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 1.7e-22 111.7 142 38.0
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.7e-22 111.7 144 38.9
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.9e-22 110.2 87 62.1
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 2.4e-21 107.8 146 37.0
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.4e-21 107.8 125 43.2
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 3.2e-21 107.5 146 36.3
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 3.2e-21 107.5 146 37.0
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 7.0e-21 106.3 139 39.6
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 9.2e-21 105.9 138 42.8
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 1.6e-20 105.1 143 39.2
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 1.7e-19 101.7 146 35.6
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 6.6e-19 99.8 149 34.9
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 1.1e-18 99.0 111 47.7
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 2.5e-18 97.8 144 36.8
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 8.1e-17 92.8 112 40.2
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 3.1e-16 90.9 117 42.7
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 8.9e-16 89.4 128 38.3
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 8.9e-16 89.4 111 40.5
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 1.2e-15 89.0 93 49.5
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 1.2e-15 89.0 122 41.0
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 2.6e-15 87.8 112 42.0
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 4.4e-15 87.0 144 36.1
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 9.8e-15 85.9 134 41.0
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.3e-14 85.5 128 37.5
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.7e-14 85.1 133 33.8
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.9e-14 84.3 139 38.8
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.9e-14 84.3 139 38.8
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 2.9e-14 84.3 124 37.9
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 2.9e-14 84.3 118 39.0
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 2.9e-14 84.3 118 40.7
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.7e-14 84.0 82 51.2
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 8.3e-14 82.8 132 35.6
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-13 82.4 139 37.4
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 1.1e-13 82.4 132 35.6
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 1.4e-13 82.0 82 50.0
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-13 81.6 135 38.5
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 3.2e-13 80.9 113 38.9
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 3.2e-13 80.9 112 40.2
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.1e-13 80.5 135 37.8
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.4e-13 80.1 135 37.0
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.4e-13 80.1 135 37.0
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 5.4e-13 80.1 132 34.8
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.1e-13 79.7 138 38.4
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 1.2e-12 79.0 113 38.9
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 2.1e-12 78.2 132 34.1
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 2.1e-12 78.2 97 40.2
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 4.6e-12 77.0 117 37.6
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 4.6e-12 77.0 138 31.9
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 4.6e-12 77.0 65 52.3
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.0e-12 76.6 139 38.1
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 7.8e-12 76.3 82 45.1
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-11 75.9 135 37.0
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-11 75.9 135 37.0
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 2.3e-11 74.7 110 41.8
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.1e-11 73.6 130 34.6
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.1e-11 73.6 130 34.6
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 8.6e-11 72.8 76 47.4
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.5e-10 72.0 110 36.4
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.3e-10 70.5 123 32.5
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 9.5e-10 69.3 102 32.4
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 1.6e-09 68.6 75 44.0
Carub.0007s1279 Capsella rubella HOM05D006694 ORTHO05D008240 1.1e-08 65.9 85 37.6
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.1e-08 65.9 127 29.1
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 1.4e-08 65.5 74 41.9
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 1.8e-08 65.1 75 41.3
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 1.8e-08 65.1 75 41.3
CANSAT78G1122 Cannabis sativa HOM05D000162 ORTHO05D000090 4.0e-08 63.9 137 26.3
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 5.2e-08 63.5 125 30.4
Migut.N00244 Erythranthe guttata HOM05D000162 ORTHO05D000090 6.8e-08 63.2 118 26.3
Lsat_1_v5_gn_2_63881 Lactuca sativa HOM05D006694 ORTHO05D008240 6.8e-08 63.2 58 44.8
Actinidia24456 Actinidia chinensis HOM05D006694 ORTHO05D008240 8.9e-08 62.8 60 40.0
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 8.9e-08 62.8 121 28.9
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 1.2e-07 62.4 61 39.3
CANSAT11G1554 Cannabis sativa HOM05D000162 ORTHO05D000090 2.0e-07 61.6 102 31.4
HPP92_025503 Vanilla planifolia HOM05D062792 ORTHO05D008240 3.4e-07 60.8 104 30.8
HPP92_025533 Vanilla planifolia HOM05D062792 ORTHO05D008240 3.4e-07 60.8 104 30.8
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 4.4e-07 60.5 138 29.7
BolC8t52228H Brassica oleracea HOM05D000162 ORTHO05D000090 7.6e-07 59.7 118 28.0
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 1.3e-06 58.9 57 59.6
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.3e-06 58.9 127 26.0
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.7e-06 58.5 125 28.8
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.7e-06 58.5 111 27.9
Manes.09G016633 Manihot esculenta HOM05D000162 ORTHO05D000090 1.7e-06 58.5 123 26.8
CiPaw.08G119900 Carya illinoinensis HOM05D000162 ORTHO05D000090 2.2e-06 58.2 109 31.2
Migut.N00243 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.9e-06 57.8 106 29.2
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 2.9e-06 57.8 63 39.7
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 2.9e-06 57.8 134 29.1
CANSAT78G1348 Cannabis sativa HOM05D000162 ORTHO05D000090 3.7e-06 57.4 136 25.7
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 3.7e-06 57.4 51 49.0
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 4.9e-06 57.0 134 27.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.9e-06 57.0 103 29.1
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 6.4e-06 56.6 82 36.6
Rhsim04G0181600 Rhododendron simsii HOM05D000162 ORTHO05D000090 6.4e-06 56.6 124 29.8
vmacro13799 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 6.4e-06 56.6 126 27.8
Nitab4.5_0009617g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 8.4e-06 56.2 134 29.9
VMungo1383G3689 Vigna mungo HOM05D000162 ORTHO05D000090 8.4e-06 56.2 118 28.8


User provided reference genes

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