Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.4e-121 438.0 220 100.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.0e-109 398.7 233 86.3
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.6e-109 397.1 233 85.8
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.4e-104 380.6 238 83.2
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.9e-103 379.4 232 81.9
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.1e-99 364.0 235 79.6
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.5e-84 315.8 233 67.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.3e-84 315.5 233 67.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.8e-83 312.4 162 92.6
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 4.9e-80 301.6 227 64.8
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 5.5e-79 298.1 231 64.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.6e-78 296.6 231 64.5
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.6e-78 296.6 235 63.8
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.0e-77 293.9 232 64.2
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 6.7e-77 291.2 233 66.1
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.7e-77 290.8 232 63.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.5e-76 290.0 237 62.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.3e-76 288.9 235 62.6
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 4.3e-76 288.5 233 64.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.3e-76 288.5 234 63.7
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 5.7e-76 288.1 222 68.9
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.6e-75 286.6 232 63.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.7e-75 285.4 233 62.2
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 6.3e-75 284.6 226 63.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.4e-74 283.5 231 62.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.1e-74 282.3 233 60.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.1e-74 282.3 232 62.5
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-73 280.4 200 69.0
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-73 280.0 177 75.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.4e-73 278.9 220 65.9
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.5e-73 278.5 234 65.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 7.6e-73 277.7 231 61.5
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 7.6e-73 277.7 234 64.5
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.0e-72 277.3 232 60.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.0e-72 277.3 234 62.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.3e-72 276.9 234 61.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 8.5e-72 274.2 233 60.9
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 8.5e-72 274.2 236 59.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.5e-72 274.2 233 60.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.5e-72 274.2 231 58.9
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 8.5e-72 274.2 233 60.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 8.5e-72 274.2 232 59.9
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 8.5e-72 274.2 233 61.8
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.1e-71 273.9 236 60.6
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.9e-71 273.1 236 60.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-71 272.3 233 61.8
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-71 272.3 233 61.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 3.2e-71 272.3 220 62.7
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.2e-71 272.3 220 62.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.2e-71 271.9 233 60.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 4.2e-71 271.9 219 62.6
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.5e-71 271.6 232 60.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.2e-70 270.4 234 59.4
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.6e-70 270.0 235 60.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.1e-70 269.6 238 60.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 3.6e-70 268.9 233 58.8
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.6e-70 268.5 234 60.7
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 6.1e-70 268.1 233 60.5
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-70 267.7 220 61.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-70 267.7 239 59.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 7.9e-70 267.7 233 61.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.0e-69 267.3 172 72.7
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.0e-69 267.3 234 60.3
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.3e-69 266.9 228 60.5
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.0e-69 265.8 234 60.3
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.0e-69 265.8 260 55.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.0e-69 265.8 177 72.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.9e-69 265.4 233 59.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 5.1e-69 265.0 179 70.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.7e-69 264.6 230 60.0
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.7e-69 264.6 177 71.8
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 6.7e-69 264.6 177 71.8
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 8.7e-69 264.2 175 72.0
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 8.7e-69 264.2 239 59.0
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.5e-68 263.5 175 70.9
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.5e-68 262.7 231 58.4
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.5e-68 262.7 232 60.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.5e-68 262.7 232 60.3
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.5e-68 262.7 239 56.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.5e-68 262.7 235 57.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 3.3e-68 262.3 234 59.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.3e-68 261.9 240 57.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.3e-68 261.9 240 57.5
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.3e-68 261.9 247 58.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 9.7e-68 260.8 260 55.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.3e-67 260.4 318 47.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-67 260.0 236 58.1
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.6e-67 260.0 182 72.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.2e-67 259.6 233 57.5
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.2e-67 259.6 241 57.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.2e-67 259.6 217 61.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.8e-67 258.5 233 58.8
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 8.2e-67 257.7 258 54.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-66 257.3 175 70.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.8e-66 256.5 236 56.8
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.4e-66 256.1 221 59.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.4e-66 256.1 217 62.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.1e-66 255.4 261 53.6
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 5.3e-66 255.0 186 66.7
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.3e-66 255.0 218 58.7
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 9.0e-66 254.2 258 54.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.2e-65 253.8 217 59.9
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.2e-65 253.8 226 58.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.5e-65 253.4 246 54.5
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.0e-65 253.1 178 69.1
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.4e-65 252.3 230 58.7
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 4.5e-65 251.9 234 59.0
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.7e-65 251.1 234 57.3
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 7.7e-65 251.1 265 53.6
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.0e-64 250.8 243 55.1
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.3e-64 250.4 224 57.1
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.9e-64 249.2 231 57.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.8e-64 248.8 266 52.3
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.5e-64 248.1 239 55.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.5e-64 248.1 175 66.9
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.5e-64 247.7 175 66.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 2.5e-63 246.1 178 68.0
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.5e-63 246.1 177 66.1
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 7.2e-63 244.6 176 67.6
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.2e-62 243.8 235 54.5
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.1e-62 243.0 176 68.2
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.6e-62 241.9 244 53.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 6.1e-62 241.5 174 66.7
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 7.9e-62 241.1 231 55.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-61 240.0 199 62.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.8e-61 240.0 174 65.5
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.9e-61 238.8 177 66.7
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 6.7e-61 238.0 220 53.6
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 8.8e-61 237.7 178 66.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.1e-60 237.3 225 55.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.3e-60 235.7 176 66.5
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.3e-60 235.7 225 52.0
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 4.8e-59 231.9 225 52.9
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 4.1e-58 228.8 159 64.2
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 5.3e-58 228.4 156 69.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.0e-57 226.5 179 63.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 3.4e-57 225.7 190 62.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.2e-56 223.0 220 56.4
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.2e-53 211.8 185 61.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-52 210.7 176 58.5
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-51 206.8 157 63.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-49 200.3 136 71.3
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-48 197.6 211 53.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-48 197.6 211 53.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 7.2e-47 191.4 120 71.7
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-46 190.3 127 64.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.1e-46 189.9 220 49.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.2e-41 174.1 168 57.7
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.3e-40 170.6 125 63.2
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 6.8e-37 158.3 166 47.6
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.0e-30 134.8 189 40.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 3.1e-26 122.9 116 50.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.4e-18 97.4 113 48.7
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 4.1e-18 95.9 95 49.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 5.9e-17 92.0 66 63.6
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.3e-13 80.1 222 27.0
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.0e-13 79.3 108 46.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 8.9e-13 78.2 60 56.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.2e-09 67.8 43 65.1


User provided reference genes

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