Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 5.4e-111 406.0 636 100.0
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 5.2e-98 362.8 633 94.0
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 5.1e-45 186.8 157 63.1
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 3.7e-43 180.6 157 70.1
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 8.2e-43 179.5 157 66.9
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 1.8e-42 178.3 157 66.9
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 4.7e-22 110.5 94 58.5
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.0e-21 107.5 87 62.1
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 6.7e-21 106.7 87 64.4
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 4.1e-18 97.4 83 54.2
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 3.5e-17 94.4 86 55.8
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 3.5e-17 94.4 86 53.5
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.3e-16 92.4 152 37.5
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 5.0e-16 90.5 86 50.0
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 6.5e-16 90.1 86 50.0
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 1.9e-15 88.6 84 51.2
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 3.2e-15 87.8 86 51.2
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 5.5e-15 87.0 86 52.3
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 7.2e-15 86.7 86 52.3
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 7.2e-15 86.7 86 50.0
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 7.2e-15 86.7 86 50.0
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 1.2e-14 85.9 60 70.0
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 1.2e-14 85.9 86 50.0
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 3.6e-14 84.3 155 45.2
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 4.7e-14 84.0 88 51.1
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 8.0e-14 83.2 86 46.5
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 1.8e-13 82.0 86 44.2
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.8e-13 82.0 76 52.6
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 1.8e-13 82.0 80 52.5
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 1.8e-13 82.0 68 60.3
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 2.3e-13 81.6 82 51.2
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 5.2e-13 80.5 87 43.7
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 5.2e-13 80.5 87 49.4
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 5.2e-13 80.5 103 40.8
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 2.0e-12 78.6 84 48.8
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 2.6e-12 78.2 76 52.6
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 2.6e-12 78.2 111 43.2
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 2.6e-12 78.2 82 46.3
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.4e-12 77.8 86 43.0
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 4.4e-12 77.4 86 43.0
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 4.4e-12 77.4 86 43.0
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 4.4e-12 77.4 86 41.9
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 4.4e-12 77.4 85 42.4
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 5.7e-12 77.0 86 48.8
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 7.5e-12 76.6 87 48.3
SalBow6G6678 Salvia bowleyana HOM05D006694 ORTHO05D008240 7.5e-12 76.6 92 43.5
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 1.3e-11 75.9 61 57.4
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 2.2e-11 75.1 123 39.0
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 2.8e-11 74.7 86 41.9
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 2.8e-11 74.7 83 43.4
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 6.3e-11 73.6 81 45.7
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 8.3e-11 73.2 85 44.7
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 8.3e-11 73.2 86 43.0
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 8.3e-11 73.2 60 58.3
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 1.8e-10 72.0 86 43.0
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.8e-10 72.0 88 44.3
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 5.4e-10 70.5 88 47.7
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 5.4e-10 70.5 87 40.2
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 5.4e-10 70.5 88 42.0
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 9.1e-10 69.7 82 45.1
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 1.2e-09 69.3 72 44.4
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 1.2e-09 69.3 106 34.9
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.6e-09 68.9 86 41.9
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 2.0e-09 68.6 86 43.0
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 2.0e-09 68.6 83 44.6
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.5e-09 67.8 86 41.9
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 3.5e-09 67.8 86 44.2
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.9e-09 67.0 83 43.4
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.9e-09 67.0 83 43.4
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 7.7e-09 66.6 75 45.3
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 7.7e-09 66.6 71 43.7
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 6.5e-08 63.5 82 42.7
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-07 62.0 83 41.0
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.5e-07 61.6 86 39.5
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.5e-07 61.6 86 39.5
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.5e-07 61.6 86 40.7
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 2.5e-07 61.6 56 55.4
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 4.2e-07 60.8 49 57.1
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.5e-07 60.5 86 38.4
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 1.2e-06 59.3 46 60.9
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-06 58.9 86 38.4
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-06 58.9 83 38.6
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.6e-06 58.9 87 37.9
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 1.6e-06 58.9 52 57.7
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 2.1e-06 58.5 53 50.9
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.6e-06 57.8 80 41.2
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 6.1e-06 57.0 75 36.0
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 6.1e-06 57.0 86 36.0
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 8.0e-06 56.6 67 43.3


User provided reference genes

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