Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.1e-212 743.0 379 100.0
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.6e-206 721.8 379 96.6
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.0e-193 679.1 379 90.2
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.7e-192 676.0 379 88.9
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 1.7e-192 676.0 379 89.7
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.0e-169 599.4 379 77.3
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 3.9e-165 585.1 379 74.4
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 6.6e-165 584.3 379 79.4
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 5.4e-159 564.7 379 71.0
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.0e-158 562.8 376 71.8
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.9e-157 558.5 376 72.6
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 6.6e-157 557.8 376 72.3
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.1e-156 557.0 379 72.0
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.5e-156 556.6 361 74.5
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 3.3e-156 555.4 375 70.9
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.1e-154 548.9 376 69.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 6.8e-154 547.7 376 70.5
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 8.9e-154 547.4 379 70.4
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.2e-153 547.0 375 70.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.0e-153 546.2 376 70.2
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 5.8e-153 544.7 375 70.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 5.8e-153 544.7 376 69.7
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.3e-152 543.5 376 70.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-152 543.1 375 69.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.9e-152 542.3 376 69.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 4.9e-152 541.6 376 69.4
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 8.3e-152 540.8 375 68.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 8.3e-152 540.8 376 68.6
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 8.3e-152 540.8 375 69.6
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.4e-151 540.0 376 70.7
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.2e-151 538.9 377 69.5
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.6e-150 536.6 375 68.0
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.6e-150 536.6 375 68.3
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.7e-150 535.8 378 67.2
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.0e-149 533.9 380 69.5
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.3e-149 533.5 375 69.3
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.7e-149 533.1 375 68.5
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 3.9e-149 531.9 379 67.8
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.5e-148 530.0 429 63.6
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 1.9e-148 529.6 376 69.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.2e-147 526.9 375 67.7
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.6e-147 526.6 379 65.2
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 4.7e-147 525.0 380 68.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 4.7e-147 525.0 380 67.6
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.4e-146 522.7 375 68.8
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.1e-146 522.3 376 68.6
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 8.9e-146 520.8 376 67.3
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-145 520.4 375 68.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.4e-145 518.8 385 65.2
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 7.6e-145 517.7 380 67.1
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 2.9e-144 515.8 375 67.2
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 3.8e-144 515.4 379 67.0
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 8.4e-144 514.2 375 67.7
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.2e-142 510.4 373 66.2
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.1e-142 509.6 376 65.7
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 6.0e-142 508.1 375 65.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 7.8e-142 507.7 380 62.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 7.8e-142 507.7 373 66.2
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.3e-141 506.9 379 62.8
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.3e-141 506.9 375 66.1
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 3.0e-141 505.8 380 62.4
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 8.6e-141 504.2 381 63.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 8.6e-141 504.2 379 62.8
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.1e-140 503.8 379 62.8
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 1.5e-140 503.4 379 62.0
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.5e-140 503.4 379 63.6
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-140 503.1 380 61.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.5e-140 502.7 380 61.8
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 3.3e-140 502.3 379 62.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 5.6e-140 501.5 380 61.6
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 5.6e-140 501.5 380 61.6
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 9.6e-140 500.7 375 65.3
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.6e-139 500.0 378 64.3
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.6e-139 500.0 379 63.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.8e-139 499.2 379 61.7
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 2.4e-138 496.1 381 63.3
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.6e-137 492.7 379 62.5
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 9.9e-137 490.7 406 60.1
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 3.8e-136 488.8 378 63.2
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 3.2e-135 485.7 376 60.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.6e-134 483.4 377 63.1
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 6.0e-134 481.5 398 61.3
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 5.6e-132 474.9 427 56.4
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.1e-131 473.0 375 63.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.2e-131 471.5 365 64.7
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.2e-129 467.2 376 59.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 3.9e-125 452.2 379 60.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.1e-125 451.8 375 61.1
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.4e-121 439.1 375 57.6
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.7e-120 436.8 368 56.5
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 9.3e-119 431.0 316 66.5
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 8.2e-115 417.9 385 56.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 7.4e-108 394.8 266 70.7
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 2.9e-104 382.9 376 48.9
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 2.3e-101 373.2 372 51.1
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 3.3e-100 369.4 269 64.7
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.0e-92 343.6 406 47.5
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.0e-88 331.3 280 59.3
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.7e-83 313.9 191 77.5
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.4e-82 310.1 370 43.8
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.7e-75 287.3 263 57.8
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 2.1e-70 270.4 368 40.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.0e-52 210.7 166 63.3
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 2.9e-51 206.8 223 48.9
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 2.9e-51 206.8 223 48.9
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.7e-48 197.6 169 54.4
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 2.8e-46 190.3 138 63.8
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.0e-46 188.7 124 66.9
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-44 184.5 381 38.3
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 4.4e-44 183.0 135 67.4
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.4e-42 177.9 112 69.6
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 4.1e-42 176.4 124 68.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.1e-33 147.5 371 30.2
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 6.6e-32 142.5 110 70.0
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 2.5e-31 140.6 119 56.3
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 2.3e-24 117.5 82 73.2
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 3.8e-19 100.1 350 25.1
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.9e-16 90.1 74 66.2
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 6.6e-16 89.4 51 80.4
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 7.3e-15 85.9 51 84.3
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.8e-14 84.0 74 59.5
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 4.8e-14 83.2 52 80.8
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-13 81.6 54 72.2
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.9e-11 73.9 114 45.6
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 3.5e-09 67.0 36 88.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 7.9e-09 65.9 45 73.3
MCO11G815 Micromonas commoda HOM05D000406 ORTHO05D002714 8.7e-08 62.4 280 26.1
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.1e-07 62.0 48 64.6
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-07 62.0 50 64.0
arahy.Tifrunner.gnm1.ann1.5D55UE Arachis hypogaea HOM05D001142 ORTHO05D004628 1.9e-07 61.2 278 25.5
arahy.Tifrunner.gnm1.ann1.5G9G3T Arachis hypogaea HOM05D001142 ORTHO05D004628 1.9e-07 61.2 278 25.5
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 3.3e-07 60.5 63 54.0
C06p54340 Brassica napus HOM05D001142 ORTHO05D004628 5.6e-07 59.7 279 25.8
BolC6t40445H Brassica oleracea HOM05D001142 ORTHO05D004628 5.6e-07 59.7 279 25.8
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 7.4e-07 59.3 279 26.2
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 7.4e-07 59.3 279 26.2
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-06 58.5 53 54.7
Thhalv10018951m.g Eutrema salsugineum HOM05D001142 ORTHO05D004628 1.3e-06 58.5 268 26.1
BcaC08g47559 Brassica carinata HOM05D001142 ORTHO05D004628 1.6e-06 58.2 281 26.3
Gohir.A09G082400 Gossypium hirsutum HOM05D001142 ORTHO05D004628 1.6e-06 58.2 282 24.8
Gohir.D09G082200 Gossypium hirsutum HOM05D001142 ORTHO05D004628 1.6e-06 58.2 282 24.8
Gorai.006G098000 Gossypium raimondii HOM05D001142 ORTHO05D004628 1.6e-06 58.2 282 24.8
QL09p011009 Quercus lobata HOM05D002314 ORTHO05D002538 1.6e-06 58.2 381 24.9
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 2.1e-06 57.8 38 73.7
Lalb_Chr24g0395861 Lupinus albus HOM05D001142 ORTHO05D004628 2.8e-06 57.4 276 25.4
arahy.Tifrunner.gnm1.ann1.BG34PE Arachis hypogaea HOM05D000406 ORTHO05D003425 3.7e-06 57.0 121 29.8
arahy.Tifrunner.gnm1.ann1.C24K44 Arachis hypogaea HOM05D000406 ORTHO05D003425 3.7e-06 57.0 121 29.8
Glyma.08G115600 Glycine max HOM05D000406 ORTHO05D003425 3.7e-06 57.0 121 29.8
Glyma.05G157800 Glycine max HOM05D000406 ORTHO05D003425 4.8e-06 56.6 121 29.8
SGA_v2.0_scaffold3G01669 Striga asiatica HOM05D000406 ORTHO05D003425 4.8e-06 56.6 121 29.8
THA.LOC104807534 Tarenaya hassleriana HOM05D000406 ORTHO05D003425 4.8e-06 56.6 121 30.6
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 4.8e-06 56.6 113 33.6
CDE05G3542 Ceratophyllum demersum HOM05D001142 ORTHO05D004628 6.2e-06 56.2 271 23.6
SMO356G0048 Selaginella moellendorffii HOM05D001142 ORTHO05D004628 6.2e-06 56.2 370 21.4
THA.LOC104799052 Tarenaya hassleriana HOM05D000406 ORTHO05D003425 6.2e-06 56.2 121 30.6
Glyma.07G005300 Glycine max HOM05D001142 ORTHO05D004628 8.1e-06 55.8 280 24.3
Lj4g0011432 Lotus japonicus HOM05D000406 ORTHO05D003425 8.1e-06 55.8 121 29.8


User provided reference genes

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