Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.3e-139 497.7 248 100.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.0e-126 455.3 248 92.3
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.2e-102 374.8 247 75.7
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.2e-102 374.8 242 78.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.7e-101 371.3 247 75.3
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.5e-101 370.9 247 74.9
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-99 366.3 243 74.9
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 8.6e-97 357.5 243 76.1
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.0e-94 348.6 246 72.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-93 346.7 247 70.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.0e-93 346.3 218 77.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 6.3e-92 341.3 244 71.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 4.1e-91 338.6 244 70.9
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.2e-90 337.0 255 72.5
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.1e-88 330.5 245 69.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.9e-88 329.7 247 70.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 2.1e-87 326.2 245 68.6
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.7e-87 325.1 256 66.4
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.7e-87 325.1 248 67.3
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.2e-85 320.5 269 62.5
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.2e-85 320.5 251 67.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.2e-85 320.5 251 68.5
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 7.5e-85 317.8 250 68.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 8.3e-84 314.3 249 65.9
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.7e-82 309.3 256 64.8
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 3.5e-82 308.9 248 65.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.6e-82 308.5 217 72.8
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-81 307.4 248 64.9
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.0e-81 305.8 249 67.5
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 8.6e-81 304.3 250 65.6
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.2e-79 300.4 237 67.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.1e-79 299.7 253 62.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.1e-78 297.4 214 71.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-78 297.4 250 64.0
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.3e-78 296.2 273 62.3
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.8e-78 294.7 247 65.2
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.5e-77 293.5 251 65.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.0e-77 293.1 252 63.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-77 292.7 247 65.2
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.4e-77 292.0 247 64.8
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 7.5e-77 291.2 244 63.9
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 9.8e-77 290.8 262 58.8
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.7e-76 288.9 252 64.3
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.1e-75 287.3 254 61.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.1e-75 287.3 249 61.4
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.4e-75 287.0 219 68.0
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.4e-75 287.0 263 62.4
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 3.2e-75 285.8 242 64.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.2e-75 285.8 256 59.4
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.4e-75 285.0 234 63.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 9.2e-75 284.3 251 62.5
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.6e-74 283.5 242 61.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.1e-74 283.1 241 62.2
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.7e-74 282.7 267 60.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 3.5e-74 282.3 241 62.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.3e-73 279.6 253 62.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.3e-73 279.6 239 64.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.3e-73 279.6 251 59.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 3.9e-73 278.9 266 60.2
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 6.6e-73 278.1 241 61.4
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.5e-72 276.9 275 54.5
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-72 276.2 266 56.0
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.3e-72 275.4 243 61.3
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.1e-71 273.1 248 61.3
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.6e-71 272.3 268 56.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.3e-70 269.6 257 57.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.2e-70 268.5 226 61.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.2e-70 268.5 210 65.7
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.8e-70 268.1 262 59.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.6e-69 266.2 246 61.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-69 266.2 251 59.4
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.4e-69 265.8 251 59.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.8e-69 265.0 251 59.0
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 9.9e-69 264.2 220 65.9
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.7e-68 263.5 280 55.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.7e-68 263.5 302 51.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.9e-68 261.9 244 60.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.9e-67 260.0 247 57.9
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.9e-67 260.0 247 57.9
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 261 54.8
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.1e-66 256.5 209 66.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.7e-66 256.1 254 58.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-65 254.2 246 58.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.3e-65 253.1 247 56.7
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 3.3e-64 249.2 180 70.6
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.2e-63 247.3 254 56.7
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.6e-63 246.9 217 59.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.1e-63 246.5 253 55.3
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.6e-63 245.7 232 58.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 6.2e-63 245.0 243 57.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.1e-62 244.2 208 64.9
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.1e-62 244.2 179 70.9
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.4e-62 243.8 233 59.2
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.8e-62 243.4 251 55.4
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.4e-62 243.0 222 58.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 8.9e-62 241.1 227 58.1
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.5e-61 240.4 256 55.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.3e-60 237.3 260 55.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.2e-60 236.5 238 56.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.2e-60 236.5 194 62.9
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-60 236.1 260 54.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 6.4e-60 235.0 260 54.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 6.4e-60 235.0 260 54.6
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 8.4e-60 234.6 246 54.1
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.1e-59 234.2 231 56.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.4e-59 233.8 178 68.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 9.2e-59 231.1 252 56.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 9.2e-59 231.1 224 58.9
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 3.5e-58 229.2 250 53.6
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 7.8e-58 228.0 265 51.3
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 6.6e-57 224.9 178 69.1
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 4.0e-54 215.7 253 52.2
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.9e-54 214.9 268 47.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-53 213.8 182 58.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.6e-53 213.0 255 51.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.8e-52 209.1 254 48.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 3.2e-51 206.1 238 51.3
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.2e-51 205.7 200 58.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.2e-51 205.7 257 49.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.2e-51 205.7 220 53.2
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 5.4e-51 205.3 256 46.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-50 203.0 256 48.4
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.0e-50 201.8 180 61.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 7.8e-50 201.4 177 57.1
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-49 199.5 222 51.8
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.0e-49 199.5 175 61.7
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 6.6e-49 198.4 188 52.7
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.5e-48 197.2 165 60.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.3e-48 195.7 196 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.4e-46 189.9 143 62.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.0e-45 186.8 204 54.4
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.9e-44 183.0 117 71.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 5.4e-43 178.7 217 48.8
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-42 177.6 139 71.9
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.1e-42 176.8 256 45.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.1e-41 172.2 197 49.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.1e-40 171.0 140 68.6
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-40 170.6 178 51.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.5e-37 160.6 140 67.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.3e-36 157.5 160 56.9
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.9e-35 153.7 104 72.1
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.0e-34 148.7 140 57.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.3e-33 146.7 140 64.3
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-32 144.1 133 63.9
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.4e-32 141.7 137 53.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 7.4e-32 141.7 174 44.8
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 4.8e-31 139.0 149 59.7
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 3.1e-30 136.3 110 60.9
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.4e-29 132.9 132 58.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.2e-27 126.3 165 49.7
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 6.7e-25 118.6 250 40.0
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 8.7e-25 118.2 256 37.5
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.6e-23 114.0 154 51.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 6.3e-23 112.1 199 38.7
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 6.9e-22 108.6 108 49.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.3e-20 104.4 97 63.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.7e-20 104.0 122 41.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.8e-20 102.8 96 49.0
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.5e-20 102.1 101 56.4
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.6e-18 97.4 68 69.1
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 7.9e-18 95.1 142 49.3
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 9.7e-16 88.2 89 55.1
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 3.1e-14 83.2 119 42.0
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 5.3e-14 82.4 103 51.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.6e-13 80.1 69 55.1
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 2.6e-13 80.1 68 63.2
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 5.9e-13 79.0 82 53.7
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-11 74.7 53 58.5
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.8e-09 65.1 60 56.7
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.5e-08 64.3 50 56.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.4e-06 57.8 59 42.4
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.8e-06 57.4 89 42.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-06 56.6 89 41.6
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 7.0e-06 55.5 69 58.0
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 7.0e-06 55.5 69 58.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 7.0e-06 55.5 66 36.4
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 7.0e-06 55.5 34 67.6


User provided reference genes

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