Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.3e-61 237.7 109 100.0
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.7e-55 217.6 100 98.0
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.0e-42 175.6 82 95.1
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.0e-42 175.6 82 95.1
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.0e-42 175.6 82 95.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-40 169.9 83 91.6
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.2e-40 168.3 84 92.9
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 4.2e-40 167.9 82 90.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.1e-39 164.1 88 83.0
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.1e-39 164.1 88 83.0
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 8.8e-38 160.2 86 82.6
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 8.8e-38 160.2 83 84.3
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 8.8e-38 160.2 83 85.5
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 8.8e-38 160.2 86 81.4
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.2e-37 159.8 83 84.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.5e-37 159.5 86 81.4
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.5e-37 159.5 84 83.3
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.6e-37 158.7 86 82.6
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.6e-37 158.7 89 78.7
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 4.4e-37 157.9 83 80.7
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 5.7e-37 157.5 80 80.0
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 5.7e-37 157.5 80 80.0
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.5e-37 157.1 84 82.1
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 9.7e-37 156.8 80 85.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.3e-36 156.4 81 81.5
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.3e-36 156.4 84 81.0
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.3e-36 156.4 81 81.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.7e-36 156.0 86 80.2
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.7e-36 156.0 80 82.5
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.8e-36 155.2 81 84.0
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.8e-36 155.2 81 84.0
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.7e-36 154.8 83 78.3
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 4.8e-36 154.5 85 78.8
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.8e-36 154.5 88 73.9
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.3e-36 154.1 86 77.9
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 6.3e-36 154.1 84 81.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 6.3e-36 154.1 89 76.4
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 6.3e-36 154.1 85 78.8
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 8.2e-36 153.7 90 74.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 8.2e-36 153.7 86 79.1
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 8.2e-36 153.7 85 78.8
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 8.2e-36 153.7 86 77.9
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.2e-36 153.7 84 79.8
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-35 153.3 86 77.9
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-35 153.3 86 77.9
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.1e-35 153.3 85 78.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.1e-35 153.3 81 80.2
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.1e-35 153.3 82 79.3
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-35 152.9 80 80.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.4e-35 152.9 89 76.4
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.8e-35 152.5 85 81.2
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.8e-35 152.5 83 80.7
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.8e-35 152.5 86 77.9
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.4e-35 152.1 78 80.8
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.4e-35 152.1 82 78.0
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-35 151.8 78 80.8
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.1e-35 151.8 83 78.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.1e-35 151.8 83 78.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.1e-35 151.8 83 78.3
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.1e-35 151.8 84 78.6
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.1e-35 151.4 84 77.4
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.3e-35 151.0 89 76.4
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 7.0e-35 150.6 81 77.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 7.0e-35 150.6 81 79.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 7.0e-35 150.6 83 78.3
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 7.0e-35 150.6 82 76.8
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.2e-34 149.8 82 81.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.2e-34 149.8 82 81.7
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-34 149.4 78 79.5
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.0e-34 149.1 79 78.5
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.0e-34 149.1 81 79.0
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 3.5e-34 148.3 79 78.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 3.5e-34 148.3 81 77.8
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 4.5e-34 147.9 78 80.8
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 4.5e-34 147.9 80 78.8
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 4.5e-34 147.9 77 79.2
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 4.5e-34 147.9 80 78.8
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 4.5e-34 147.9 79 81.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 4.5e-34 147.9 89 73.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 5.9e-34 147.5 81 77.8
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 7.7e-34 147.1 83 73.5
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 7.7e-34 147.1 70 88.6
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.7e-34 147.1 81 80.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 7.7e-34 147.1 81 77.8
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.3e-33 146.4 70 88.6
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.3e-33 146.4 84 73.8
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.3e-33 146.4 85 74.1
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.7e-33 146.0 80 77.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.7e-33 146.0 81 76.5
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.2e-33 145.6 83 74.7
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.9e-33 145.2 79 78.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.9e-33 145.2 82 74.4
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.9e-33 145.2 88 75.0
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 3.8e-33 144.8 78 79.5
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.8e-33 144.8 82 74.4
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.0e-33 144.4 85 75.3
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 5.0e-33 144.4 80 76.2
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.5e-33 144.1 83 75.9
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.5e-32 142.9 83 74.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.5e-32 142.1 81 75.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.2e-32 141.4 79 74.7
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 7.2e-32 140.6 82 78.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.7e-31 138.7 90 72.2
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.7e-31 138.7 109 61.5
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 8.0e-31 137.1 81 72.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.4e-30 136.3 78 75.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.8e-30 136.0 80 72.5
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 2.6e-29 132.1 79 72.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.6e-26 122.9 63 79.4
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.5e-26 121.3 63 81.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.7e-25 119.4 155 41.9
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.5e-25 117.5 60 91.7
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 6.1e-23 110.9 80 57.5
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-22 108.6 55 81.8
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-22 108.6 55 81.8
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.5e-21 106.3 60 80.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.0e-21 105.9 62 75.8
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 9.8e-21 103.6 66 71.2
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 9.8e-21 103.6 59 74.6
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 9.8e-21 103.6 62 74.2
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.3e-20 103.2 80 57.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-20 103.2 62 72.6
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.8e-20 102.1 62 74.2
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.8e-20 102.1 61 72.1
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.1e-19 100.1 58 74.1
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-19 99.8 55 76.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 4.1e-19 98.2 55 78.2
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 5.4e-19 97.8 62 71.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 5.4e-19 97.8 61 67.2
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 9.2e-19 97.1 55 76.4
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 9.2e-19 97.1 55 74.5
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.2e-18 96.7 54 77.8
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.6e-18 96.3 69 66.7
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.0e-18 95.9 59 72.9
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-18 95.9 53 75.5
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.7e-18 95.5 58 72.4
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.7e-18 95.5 60 71.7
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 5.9e-18 94.4 57 73.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 7.8e-18 94.0 53 75.5
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.8e-17 91.7 58 72.4
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-14 83.6 61 62.3
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.3e-12 76.6 65 52.3
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.7e-12 75.1 75 48.0
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.7e-12 75.1 39 76.9
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 4.1e-11 71.6 62 50.0


User provided reference genes

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