Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.0e-62 242.3 124 100.0
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 3.5e-30 135.2 113 66.4
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 5.0e-29 131.3 80 80.0
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 5.5e-28 127.9 80 80.0
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 1.2e-22 110.2 74 74.3
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 4.5e-22 108.2 69 76.8
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 1.5e-20 103.2 80 63.8
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.2e-19 100.1 80 62.5
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 4.7e-19 98.2 80 61.2
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 1.8e-18 96.3 77 66.2
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 3.0e-18 95.5 84 57.1
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 4.0e-18 95.1 84 58.3
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 8.8e-18 94.0 100 51.0
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 1.2e-17 93.6 64 71.9
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.5e-17 93.2 59 74.6
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 3.4e-17 92.0 82 61.0
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 4.4e-17 91.7 82 54.9
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.3e-16 90.1 83 56.6
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.7e-16 89.7 64 67.2
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 1.7e-16 89.7 83 56.6
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 2.2e-16 89.4 69 65.2
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.7e-16 88.6 82 53.7
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.7e-16 88.6 82 53.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.7e-16 88.6 81 58.0
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.8e-16 88.2 83 55.4
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 6.3e-16 87.8 71 60.6
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 8.3e-16 87.4 83 53.0
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 8.3e-16 87.4 83 55.4
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 8.3e-16 87.4 78 59.0
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 3.1e-15 85.5 61 73.8
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 3.1e-15 85.5 66 65.2
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 3.1e-15 85.5 66 63.6
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 3.1e-15 85.5 67 64.2
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 3.1e-15 85.5 64 70.3
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 5.4e-15 84.7 86 55.8
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 5.4e-15 84.7 57 73.7
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 7.0e-15 84.3 71 62.0
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 9.1e-15 84.0 58 69.0
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.2e-14 83.6 64 64.1
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.2e-14 83.6 66 60.6
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.2e-14 83.6 58 69.0
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 2.7e-14 82.4 82 52.4
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 3.5e-14 82.0 70 60.0
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 7.7e-14 80.9 83 51.8
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 7.7e-14 80.9 87 50.6
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 1.3e-13 80.1 63 61.9
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.7e-13 79.7 69 56.5
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 2.2e-13 79.3 57 68.4
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 2.9e-13 79.0 77 53.2
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 3.8e-13 78.6 74 59.5
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 3.8e-13 78.6 76 53.9
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 5.0e-13 78.2 71 52.1
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 6.5e-13 77.8 82 47.6
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 8.5e-13 77.4 82 48.8
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 8.5e-13 77.4 65 55.4
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 1.1e-12 77.0 82 51.2
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 1.1e-12 77.0 80 51.2
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.1e-12 77.0 76 53.9
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 1.5e-12 76.6 71 52.1
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 1.9e-12 76.3 77 54.5
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 1.9e-12 76.3 70 52.9
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 1.9e-12 76.3 89 46.1
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 1.9e-12 76.3 49 79.6
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.9e-12 76.3 67 58.2
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 2.5e-12 75.9 58 62.1
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 4.2e-12 75.1 59 55.9
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 7.2e-12 74.3 65 56.9
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 1.6e-11 73.2 66 56.1
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 1.6e-11 73.2 72 54.2
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 2.1e-11 72.8 73 50.7
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 6.1e-11 71.2 73 50.7
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 8.0e-11 70.9 55 58.2
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 1.0e-10 70.5 90 42.2
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 1.8e-10 69.7 73 49.3
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 1.8e-10 69.7 73 49.3
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 2.3e-10 69.3 73 52.1
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 2.3e-10 69.3 73 49.3
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 4.0e-10 68.6 58 53.4
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 5.2e-10 68.2 73 47.9
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 5.2e-10 68.2 57 59.6
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 5.2e-10 68.2 57 59.6
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 8.8e-10 67.4 58 51.7
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 8.8e-10 67.4 80 42.5
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 1.2e-09 67.0 58 55.2
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 2.0e-09 66.2 72 44.4
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 5.7e-09 64.7 66 53.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 7.5e-09 64.3 56 50.0
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 1.3e-08 63.5 58 51.7
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-08 63.5 57 56.1
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-08 63.5 57 56.1
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-08 63.5 57 56.1
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 2.2e-08 62.8 93 37.6
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 2.2e-08 62.8 56 51.8
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 2.8e-08 62.4 67 47.8
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 3.7e-08 62.0 56 51.8
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 3.7e-08 62.0 57 56.1
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 4.9e-08 61.6 85 43.5
Nitab4.5_0007081g0030 Nicotiana tabacum HOM05D007513 ORTHO05D008148 6.3e-08 61.2 71 50.7
SEGI_38697 Sequoiadendron giganteum HOM05D007513 ORTHO05D008148 6.3e-08 61.2 62 50.0
PSO170G3772 Papaver somniferum HOM05D007513 ORTHO05D008148 1.1e-07 60.5 67 50.7
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-07 60.1 52 53.8
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 5.4e-07 58.2 46 58.7
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 1.2e-06 57.0 59 47.5
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 1.2e-06 57.0 79 40.5
AT4G37608 Arabidopsis thaliana HOM05D014277 ORTHO05D008148 2.7e-06 55.8 73 43.8
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 5.9e-06 54.7 44 56.8


User provided reference genes

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