Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.7e-168 593.6 305 100.0
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 9.3e-162 573.5 303 96.4
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 5.3e-141 504.6 297 87.9
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 8.0e-137 490.7 303 84.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.7e-134 483.0 297 85.5
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 5.3e-133 478.0 297 84.8
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.6e-121 439.9 300 77.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 3.7e-118 428.7 295 75.3
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.5e-116 422.2 303 70.0
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.0e-115 420.6 298 75.2
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.7e-115 419.9 304 69.4
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 2.3e-112 409.5 305 66.9
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.0e-112 408.7 298 71.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 8.9e-112 407.5 306 69.6
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.6e-111 406.0 299 70.9
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 2.2e-110 402.9 293 71.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 3.7e-110 402.1 292 70.5
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.4e-110 401.4 293 71.7
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.1e-109 400.6 296 70.3
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.8e-109 399.8 295 69.8
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.4e-109 399.4 295 70.5
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.6e-108 396.7 297 70.4
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 4.6e-108 395.2 299 68.2
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 8.6e-107 391.0 305 70.2
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.6e-105 386.7 305 66.2
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 2.1e-105 386.3 299 66.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.1e-104 382.5 307 65.5
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 3.4e-103 379.0 302 64.6
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.4e-103 378.6 298 65.4
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.5e-103 377.9 296 68.6
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.5e-103 377.9 296 68.6
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.5e-103 377.9 290 66.6
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 2.2e-102 376.3 304 66.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.9e-102 375.9 296 64.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.7e-102 375.6 296 67.9
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 8.3e-102 374.4 296 65.9
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.3e-102 374.4 290 66.6
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 8.3e-102 374.4 290 66.6
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.1e-101 374.0 296 67.6
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.1e-101 374.0 296 67.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.4e-101 371.7 303 66.3
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 9.2e-101 370.9 298 65.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.6e-100 370.2 295 62.7
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.0e-100 369.8 306 66.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 4.6e-100 368.6 299 66.6
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 6.0e-100 368.2 301 64.5
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 6.0e-100 368.2 297 66.7
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 6.0e-100 368.2 301 64.5
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 3.0e-99 365.9 296 65.9
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.0e-99 365.9 299 65.6
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 3.0e-99 365.9 305 63.9
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 3.9e-99 365.5 296 64.5
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 8.6e-99 364.4 293 65.9
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 8.6e-99 364.4 295 67.1
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 4.3e-98 362.1 287 66.9
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.6e-97 360.1 297 65.3
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.6e-97 360.1 297 65.3
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.6e-97 359.0 301 58.5
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 4.7e-97 358.6 306 61.8
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 1.4e-96 357.1 304 65.5
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 6.8e-96 354.8 307 59.6
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.2e-95 354.0 305 61.3
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.6e-95 352.8 301 63.1
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.2e-94 349.7 296 61.5
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 6.4e-94 348.2 303 64.4
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 1.4e-93 347.1 295 64.4
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-93 347.1 293 63.8
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.4e-93 347.1 298 63.8
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 4.1e-93 345.5 246 74.4
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 5.4e-93 345.1 296 64.5
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 9.2e-93 344.4 304 60.9
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 9.2e-93 344.4 302 64.2
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.6e-92 343.6 270 65.2
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-92 343.2 296 64.2
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.0e-91 340.9 305 60.3
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-91 340.5 306 58.8
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-91 340.5 315 58.4
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 1.3e-91 340.5 315 58.4
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.3e-91 340.5 305 62.6
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 3.0e-91 339.3 305 59.3
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.9e-91 339.0 300 62.7
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 5.1e-91 338.6 313 59.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.6e-91 337.8 305 60.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.5e-90 337.0 294 60.5
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.3e-90 335.9 309 57.6
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.3e-90 335.9 297 62.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.3e-90 335.5 308 59.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 4.3e-90 335.5 313 59.4
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.6e-90 335.1 311 59.5
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 5.6e-90 335.1 300 62.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.2e-89 334.0 313 59.1
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.6e-89 333.6 298 58.4
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 3.6e-89 332.4 311 58.2
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 4.7e-89 332.0 267 64.4
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 8.1e-89 331.3 314 57.3
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-88 330.9 308 61.4
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.1e-88 330.9 301 58.8
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 3.1e-88 329.3 306 60.8
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 4.0e-88 328.9 364 53.0
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 4.1e-85 318.9 301 55.8
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.4e-85 318.5 305 56.4
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 7.1e-85 318.2 278 60.4
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 9.2e-85 317.8 312 56.1
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.2e-84 317.4 305 57.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.1e-84 316.6 233 70.0
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.3e-83 313.9 308 55.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.1e-82 310.8 271 63.8
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.5e-82 309.7 302 57.3
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.1e-81 306.6 304 54.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.1e-81 306.6 306 53.3
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 6.2e-81 305.1 304 54.9
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.0e-79 300.1 296 54.4
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.1e-77 294.3 317 49.8
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.1e-77 291.6 261 60.2
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.6e-76 290.4 309 53.7
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.5e-76 289.3 315 54.6
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 8.7e-75 284.6 280 55.7
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.5e-74 283.9 238 60.5
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.5e-71 273.9 228 66.2
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.2e-63 247.7 298 51.0
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.2e-62 243.4 324 42.9
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.4e-61 240.7 318 47.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 6.7e-59 231.9 223 55.2
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.7e-57 226.1 175 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 5.8e-55 218.8 206 56.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.1e-48 196.4 201 55.2
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 6.9e-48 195.3 225 44.0
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.7e-44 183.3 278 43.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.1e-42 177.9 291 38.8
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.9e-35 152.9 131 61.1
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.9e-35 152.9 131 61.1
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 2.0e-34 150.6 97 77.3
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 3.7e-33 146.4 137 57.7
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.8e-27 127.5 207 32.9
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.0e-22 109.4 68 73.5
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 4.2e-21 106.3 68 72.1
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 9.4e-21 105.1 222 32.4
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 9.4e-21 105.1 197 33.0
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 6.7e-19 99.0 64 75.0
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-18 97.1 60 76.7
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 2.6e-18 97.1 62 75.8
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.6e-18 97.1 115 53.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 9.7e-18 95.1 94 61.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.1e-12 77.4 119 43.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.0e-11 75.1 50 70.0
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 2.3e-11 73.9 129 45.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.8e-11 72.4 43 76.7
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.6e-10 70.5 56 62.5
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.4e-10 70.1 45 68.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.2e-09 67.4 69 52.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.4e-08 63.9 39 74.4


User provided reference genes

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