Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.1e-145 520.0 265 100.0
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.5e-142 507.7 274 94.5
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-131 472.6 274 90.1
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 7.4e-131 470.7 265 89.8
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.3e-130 469.9 265 89.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.2e-130 469.2 265 89.8
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 6.3e-130 467.6 265 89.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 4.1e-113 411.8 267 82.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 9.1e-97 357.5 264 67.0
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 2.0e-96 356.3 263 69.2
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.5e-96 355.1 265 67.2
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.6e-95 351.3 265 66.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.3e-94 349.0 265 68.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 8.0e-93 344.4 265 66.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.8e-92 343.2 263 68.4
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.0e-92 342.4 265 66.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.2e-92 341.7 264 66.3
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 8.9e-92 340.9 266 65.8
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 9.8e-91 337.4 264 62.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.7e-90 336.7 261 66.3
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.8e-90 335.9 262 65.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.7e-90 335.5 254 67.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 4.9e-90 335.1 265 64.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 4.9e-90 335.1 275 64.4
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 8.3e-90 334.3 265 61.5
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.1e-89 334.0 265 63.0
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.8e-89 333.2 263 63.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.4e-89 332.8 264 64.0
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 4.1e-89 332.0 262 64.9
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.2e-88 330.5 265 63.0
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.6e-88 330.1 262 64.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 3.5e-88 328.9 274 62.0
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.5e-88 328.9 264 63.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.7e-87 326.6 264 61.7
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.9e-87 325.9 247 69.2
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.9e-87 325.9 264 62.5
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.9e-87 325.5 264 61.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.1e-86 323.9 265 61.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.5e-86 322.8 264 62.1
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 4.3e-86 322.0 264 63.6
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 4.3e-86 322.0 264 61.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 9.5e-86 320.9 265 63.4
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.8e-85 319.3 263 62.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.6e-85 318.9 264 61.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.4e-84 317.0 263 62.0
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.5e-83 313.5 264 61.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.5e-83 313.5 265 62.6
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.0e-83 313.2 264 61.4
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 9.8e-83 310.8 264 61.0
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 8.3e-82 307.8 264 59.5
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.4e-81 306.2 265 59.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.7e-80 302.8 264 59.5
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.3e-79 300.4 264 56.4
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.0e-79 299.3 264 59.5
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.9e-78 296.6 264 56.4
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-78 296.6 264 56.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.2e-77 293.9 263 55.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-77 293.9 262 56.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.6e-77 292.4 261 55.9
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.6e-77 292.4 219 68.0
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 8.0e-77 291.2 261 55.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.8e-76 290.0 240 62.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.8e-76 290.0 262 55.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 4.0e-76 288.9 262 57.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.2e-76 288.5 268 57.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.2e-76 288.5 262 55.3
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.8e-76 288.1 261 57.1
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.8e-76 288.1 277 54.2
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 8.9e-76 287.7 261 54.8
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.9e-76 287.7 262 57.6
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.0e-75 286.6 303 53.1
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.4e-75 285.4 265 56.6
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.7e-74 283.5 263 54.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-74 283.5 277 53.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.7e-74 282.3 261 54.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 6.4e-74 281.6 261 54.0
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.9e-73 280.0 159 89.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.1e-73 278.9 261 52.9
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.1e-73 278.9 263 53.6
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 4.1e-73 278.9 259 54.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.1e-72 276.6 263 53.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.0e-71 274.2 266 56.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.3e-71 273.9 263 52.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.3e-71 273.9 263 52.9
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.1e-71 271.9 266 54.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 8.6e-71 271.2 264 55.3
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.1e-69 266.5 226 59.7
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 6.2e-69 265.0 264 56.8
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.2e-67 260.8 172 73.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.2e-67 260.8 273 50.9
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.5e-67 258.1 487 36.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.9e-66 255.4 265 52.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.4e-65 251.9 264 53.4
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 6.0e-64 248.4 243 54.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.0e-63 246.1 261 49.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.6e-63 244.6 262 52.3
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 8.6e-63 244.6 192 63.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.5e-62 243.8 178 67.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 3.3e-62 242.7 264 49.6
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.8e-61 239.6 276 47.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 3.6e-61 239.2 268 50.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 4.0e-60 235.7 274 49.3
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 8.9e-60 234.6 262 51.5
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.6e-59 233.0 165 66.7
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.0e-55 219.5 265 49.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 8.7e-55 218.0 309 43.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.2e-51 207.6 154 64.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.4e-49 199.9 213 49.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.4e-49 199.9 280 46.1
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.7e-48 196.4 186 55.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 6.7e-39 165.2 107 74.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.7e-39 165.2 274 44.2
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.6e-37 160.6 106 70.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.1e-36 157.9 240 42.1
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.1e-33 147.9 103 66.0
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.3e-31 140.2 104 62.5
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.4e-30 135.2 107 63.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 5.7e-22 109.0 327 31.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.3e-21 105.5 354 29.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.5e-19 100.9 125 42.4
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.0e-18 98.2 127 46.5
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.2e-16 91.3 84 59.5
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 2.7e-16 90.1 304 30.3
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.7e-14 81.6 66 60.6
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.1e-06 58.2 52 57.7
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.7e-06 55.8 44 56.8
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.7e-06 55.8 44 56.8


User provided reference genes

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