Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.3e-105 385.6 192 100.0
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-69 265.8 184 77.2
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.2e-55 219.5 160 67.5
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 1.5e-53 213.4 161 64.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.0e-53 213.0 161 64.0
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.0e-52 210.7 159 64.8
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.6e-50 203.4 163 61.3
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.4e-49 200.3 157 63.1
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.8e-49 199.9 160 62.5
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 3.9e-49 198.7 160 60.6
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 8.8e-49 197.6 158 62.7
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 8.8e-49 197.6 157 61.1
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 8.8e-49 197.6 159 62.3
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.1e-48 197.2 156 62.8
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.6e-48 196.1 157 61.8
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.3e-48 195.7 162 58.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.3e-48 195.7 157 63.1
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.3e-48 195.7 157 63.1
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 3.3e-48 195.7 160 61.9
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 3.3e-48 195.7 156 62.8
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.3e-48 195.7 155 61.9
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 4.4e-48 195.3 162 57.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 5.7e-48 194.9 180 53.9
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 5.7e-48 194.9 159 61.0
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 7.4e-48 194.5 160 58.8
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.4e-48 194.5 162 56.2
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 7.4e-48 194.5 160 60.0
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 7.4e-48 194.5 160 59.4
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 9.7e-48 194.1 160 60.0
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 9.7e-48 194.1 157 62.4
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.7e-48 194.1 160 58.8
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.7e-48 194.1 163 55.8
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 9.7e-48 194.1 160 58.8
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.3e-47 193.7 162 56.8
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.7e-47 193.4 160 60.0
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.7e-47 193.4 159 61.0
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.7e-47 193.4 167 59.9
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 1.7e-47 193.4 161 58.4
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.2e-47 193.0 161 59.6
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 2.8e-47 192.6 161 59.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.8e-47 192.6 163 58.3
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 3.7e-47 192.2 160 58.1
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.7e-47 192.2 160 58.1
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 4.8e-47 191.8 163 58.9
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.8e-47 191.8 159 61.0
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 8.2e-47 191.0 158 58.9
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 8.2e-47 191.0 157 60.5
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.1e-46 190.7 158 57.0
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.1e-46 190.7 156 62.8
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.4e-46 190.3 155 60.6
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-46 189.9 157 61.1
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.8e-46 189.9 161 55.3
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.8e-46 189.9 153 60.8
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.8e-46 189.9 163 56.4
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 2.4e-46 189.5 156 62.2
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 3.1e-46 189.1 160 57.5
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.1e-46 189.1 160 60.0
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 3.1e-46 189.1 159 59.1
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 4.1e-46 188.7 156 59.6
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.0e-46 188.0 157 60.5
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 7.0e-46 188.0 162 58.6
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 7.0e-46 188.0 161 57.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 7.0e-46 188.0 155 58.7
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 9.1e-46 187.6 161 57.8
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 9.1e-46 187.6 158 57.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 1.2e-45 187.2 153 60.1
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.2e-45 187.2 157 58.6
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.5e-45 186.8 158 55.7
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.0e-45 186.4 156 58.3
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.0e-45 186.4 162 57.4
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.0e-45 186.4 157 59.9
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.6e-45 186.0 158 58.9
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 3.4e-45 185.7 158 58.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.4e-45 185.7 162 58.0
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 3.4e-45 185.7 155 60.6
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 3.4e-45 185.7 161 58.4
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 4.5e-45 185.3 158 57.0
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.5e-45 185.3 161 57.8
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 5.9e-45 184.9 156 57.7
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 5.9e-45 184.9 156 60.3
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.9e-45 184.9 162 58.0
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 7.7e-45 184.5 168 56.0
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.0e-44 184.1 155 60.0
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-44 184.1 156 60.3
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 1.3e-44 183.7 158 55.7
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.3e-44 183.7 158 58.2
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 2.2e-44 183.0 158 57.0
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.2e-44 183.0 158 57.0
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.9e-44 182.6 159 57.9
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 2.9e-44 182.6 156 59.6
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.9e-44 182.6 156 57.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.9e-44 182.6 161 57.8
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 2.9e-44 182.6 163 55.8
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.8e-44 182.2 156 57.1
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.0e-44 181.8 162 56.2
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 6.5e-44 181.4 157 56.7
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 6.5e-44 181.4 161 52.8
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 8.5e-44 181.0 163 56.4
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.1e-43 180.6 148 61.5
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-43 180.6 156 59.0
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 2.5e-43 179.5 160 55.0
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 3.2e-43 179.1 158 55.7
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 4.2e-43 178.7 160 55.0
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.2e-43 178.7 158 55.1
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.5e-43 178.3 142 62.0
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 5.5e-43 178.3 155 58.1
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 7.2e-43 177.9 158 53.2
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 9.4e-43 177.6 156 55.8
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.2e-42 177.2 159 54.1
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.6e-42 176.8 157 54.8
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 2.7e-42 176.0 157 53.5
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 6.1e-42 174.9 152 57.2
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 6.1e-42 174.9 156 54.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.4e-41 173.7 158 54.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.3e-41 172.9 159 56.0
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.9e-41 172.2 187 50.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 3.9e-41 172.2 158 53.2
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.6e-40 169.5 155 56.8
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 4.4e-40 168.7 158 53.8
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 7.4e-40 167.9 138 59.4
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.3e-39 167.2 201 45.3
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.7e-39 166.8 159 51.6
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.8e-39 166.0 146 56.2
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 8.2e-39 164.5 160 55.6
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-38 162.9 155 54.8
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.6e-37 160.2 159 52.2
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 3.2e-35 152.5 164 52.4
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 4.2e-35 152.1 186 45.7
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 6.1e-34 148.3 151 52.3
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 8.0e-34 147.9 121 59.5
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.7e-31 139.0 158 48.1
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 8.2e-31 137.9 95 66.3
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 8.0e-26 121.3 129 46.5
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.3e-25 119.8 161 45.3
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.4e-22 108.6 92 59.8
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 5.9e-21 105.1 168 38.1
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.7e-20 103.6 93 53.8
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 7.2e-19 98.2 148 41.2
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.3e-15 87.4 92 50.0
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-15 86.7 80 57.5
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 7.0e-14 81.6 102 45.1
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 9.2e-14 81.3 155 34.8
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 7.8e-13 78.2 148 36.5
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 7.8e-13 78.2 83 51.8
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 6.1e-10 68.6 51 60.8


User provided reference genes

Program Settings