Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 0.0e+00 1148.7 601 100.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 0.0e+00 1095.5 614 94.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 5.0e-308 1060.4 582 94.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 5.7e-304 1047.0 582 93.8
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.4e-302 1042.3 582 93.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 5.3e-302 1040.4 582 93.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.5e-301 1037.3 582 93.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 5.0e-260 901.0 578 81.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.2e-254 880.2 580 79.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.2e-253 879.8 570 79.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.0e-253 879.0 575 78.4
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.0e-252 876.7 565 79.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.6e-250 868.2 580 77.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.3e-249 865.5 592 76.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.0e-249 864.8 572 78.8
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 5.2e-249 864.4 577 78.7
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-248 862.8 580 77.1
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.0e-248 862.4 580 76.9
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.0e-248 862.4 565 78.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.4e-248 861.3 580 76.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.7e-247 859.4 580 76.7
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.1e-246 856.7 587 75.6
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.2e-246 855.1 602 74.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.6e-245 852.8 588 75.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.6e-245 852.8 567 78.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 3.5e-245 851.7 578 78.0
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 6.0e-245 850.9 580 75.3
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.3e-244 849.7 593 74.0
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.3e-244 849.0 587 74.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.3e-244 849.0 571 76.9
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 3.9e-244 848.2 569 76.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 8.6e-244 847.0 565 77.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 5.6e-243 844.3 578 76.8
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 5.6e-243 844.3 576 76.4
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.2e-242 843.2 586 74.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.6e-242 841.6 511 85.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.6e-242 841.6 591 74.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 6.2e-242 840.9 573 75.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.1e-241 840.1 590 73.6
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.1e-241 840.1 565 76.1
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.1e-241 838.6 568 77.3
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.0e-241 838.2 575 76.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.0e-241 838.2 592 73.5
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 5.2e-241 837.8 585 74.9
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.2e-240 836.6 587 73.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-240 836.6 567 76.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-240 836.3 583 74.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.5e-240 836.3 571 75.5
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.0e-240 835.9 576 75.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.6e-240 835.5 575 76.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.4e-240 835.1 576 76.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.4e-240 835.1 567 76.4
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.4e-240 834.7 562 77.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 4.4e-240 834.7 591 76.0
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 9.9e-240 833.6 570 74.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 9.9e-240 833.6 568 76.1
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 9.9e-240 833.6 576 74.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.7e-239 832.8 583 74.4
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.7e-239 832.8 576 75.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.2e-239 832.4 583 75.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.2e-239 832.4 577 75.2
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.2e-239 832.4 565 75.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.9e-239 832.0 565 75.9
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.8e-239 831.6 566 76.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.9e-239 831.2 584 74.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 8.4e-239 830.5 565 75.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-238 829.3 574 74.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.9e-238 829.3 576 75.3
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.4e-238 828.9 585 74.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.4e-238 828.9 582 73.9
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.2e-238 828.6 574 74.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.4e-238 827.8 586 72.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.4e-238 827.8 586 74.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.2e-238 827.0 586 74.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.2e-238 827.0 566 75.4
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-237 826.2 566 75.8
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.1e-237 825.9 577 74.5
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.7e-237 825.5 579 74.8
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.6e-237 824.7 584 74.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 7.8e-237 823.9 584 74.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-236 823.5 560 75.2
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.3e-236 823.2 576 73.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.3e-236 823.2 576 73.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-236 822.8 572 74.1
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-236 822.8 577 74.2
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.9e-236 821.6 573 73.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 3.9e-236 821.6 577 73.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 8.6e-236 820.5 582 73.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 8.6e-236 820.5 584 74.0
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 4.3e-235 818.1 569 74.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 4.3e-235 818.1 553 75.6
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.1e-234 815.8 564 75.0
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.7e-234 814.7 578 76.3
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.0e-233 811.6 551 75.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-232 808.9 577 74.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 5.8e-232 807.7 508 81.3
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-231 806.6 565 74.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.9e-231 805.4 581 72.3
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.4e-231 804.3 592 70.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 8.4e-231 803.9 578 74.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 3.2e-230 802.0 570 73.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 5.4e-230 801.2 589 70.6
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 3.5e-229 798.5 602 70.4
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.6e-229 798.1 596 70.8
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.7e-228 796.2 545 76.5
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 8.1e-226 787.3 570 70.9
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.1e-226 787.3 575 72.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.1e-225 786.9 702 61.4
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 6.9e-225 784.3 575 71.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.7e-223 779.6 678 63.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.4e-223 777.7 575 71.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.8e-215 751.9 575 68.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.4e-214 749.2 567 71.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 4.8e-210 734.9 595 66.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.0e-209 730.7 576 67.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.4e-208 728.8 535 70.1
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.5e-206 721.5 584 66.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 7.4e-203 711.1 567 65.6
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 8.2e-202 707.6 485 75.7
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.9e-195 686.4 522 68.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.8e-188 663.3 566 63.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-185 653.7 433 79.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.4e-177 627.1 449 73.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.4e-177 627.1 507 69.0
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.5e-174 615.1 478 67.4
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.6e-160 570.5 533 59.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.9e-151 539.7 363 78.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 6.6e-151 538.5 372 73.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 9.5e-142 508.1 519 52.6
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.4e-137 494.2 314 82.8
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.6e-135 485.3 400 67.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.7e-130 470.7 570 53.9
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.6e-120 437.6 314 73.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.9e-113 414.1 252 82.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.4e-108 397.1 509 46.2
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.4e-100 371.3 571 41.9
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-95 353.6 231 81.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 5.3e-92 342.8 230 76.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.1e-79 299.7 177 83.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 6.9e-76 289.3 210 69.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.1e-64 251.1 260 53.1
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 9.7e-62 242.3 320 43.1
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 4.0e-47 193.7 111 83.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 5.7e-46 189.9 255 43.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.7e-35 154.5 125 65.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-31 142.1 137 59.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.8e-22 110.2 250 38.0
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.4e-20 104.8 94 56.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.6e-19 102.1 85 63.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 3.5e-19 100.9 92 57.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 3.3e-17 94.4 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 3.3e-17 94.4 52 86.5
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 4.3e-17 94.0 187 38.0
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.6e-17 93.6 50 86.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.9e-14 82.8 65 69.2
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 5.4e-12 77.0 71 57.7
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 7.1e-12 76.6 70 58.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.6e-11 73.9 65 63.1
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 6.0e-11 73.6 71 56.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.5e-09 68.9 60 58.3
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.8e-08 64.7 57 50.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 8.9e-07 59.7 51 68.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.4e-06 57.8 247 28.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 4.4e-06 57.4 44 52.3


User provided reference genes

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