Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000707g0180 Nicotiana tabacum HOM05D003119 ORTHO05D003559 1.5e-109 399.4 190 100.0
Nitab4.5_0008441g0010 Nicotiana tabacum HOM05D003119 ORTHO05D003559 4.2e-96 354.8 186 90.9
CAN.G219.63 Capsicum annuum HOM05D003119 ORTHO05D003559 7.0e-91 337.4 186 86.6
Solyc01g087610.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 4.6e-90 334.7 186 85.5
Sopen01g034580 Solanum pennellii HOM05D003119 ORTHO05D003559 1.3e-89 333.2 186 84.9
Manes.10G139100 Manihot esculenta HOM05D003119 ORTHO05D003559 2.3e-81 305.8 188 74.5
CSS0008603 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 1.9e-80 302.8 185 74.1
CSS0027617 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 1.9e-80 302.8 185 74.1
Rhsim07G0058300 Rhododendron simsii HOM05D003119 ORTHO05D003559 2.5e-80 302.4 185 73.5
Hma1.2p1_1042F.1_g251140 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 5.6e-80 301.2 185 74.1
TAR633G1226 Trochodendron aralioides HOM05D003119 ORTHO05D003559 1.2e-79 300.1 185 74.1
Dinv43414 Davidia involucrata HOM05D003119 ORTHO05D003559 3.6e-79 298.5 179 77.1
GSVIVG01032165001 Vitis vinifera HOM05D003119 ORTHO05D003559 3.6e-79 298.5 184 73.4
Gohir.A08G142900 Gossypium hirsutum HOM05D003119 ORTHO05D003559 6.2e-79 297.7 186 74.2
Thecc.01G407300 Theobroma cacao HOM05D003119 ORTHO05D003559 6.2e-79 297.7 185 74.1
MBI17_g12872_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 1.1e-78 297.0 185 74.1
Cc02_g29010 Coffea canephora HOM05D003119 ORTHO05D003559 1.4e-78 296.6 185 75.1
Migut.B01276 Erythranthe guttata HOM05D003119 ORTHO05D003559 1.4e-78 296.6 183 74.3
Lj3g0004567 Lotus japonicus HOM05D003119 ORTHO05D003559 1.4e-78 296.6 185 72.4
Duzib133G0610 Durio zibethinus HOM05D003119 ORTHO05D003559 1.8e-78 296.2 186 73.1
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 2.3e-78 295.8 185 73.5
Gorai.004G170700 Gossypium raimondii HOM05D003119 ORTHO05D003559 5.2e-78 294.7 186 74.2
Lsat_1_v5_gn_4_32101 Lactuca sativa HOM05D003119 ORTHO05D003559 2.0e-77 292.7 186 70.4
arahy.Tifrunner.gnm1.ann1.X582RR Arachis hypogaea HOM05D003119 ORTHO05D003559 3.4e-77 292.0 185 71.4
ECA234G0904 Erigeron canadensis HOM05D003119 ORTHO05D003559 3.4e-77 292.0 179 73.7
Psat5g211360 Pisum sativum HOM05D003119 ORTHO05D003559 3.4e-77 292.0 185 71.4
SGA_v2.0_scaffold119G32756 Striga asiatica HOM05D003119 ORTHO05D003559 3.4e-77 292.0 185 71.9
Atru.chr11.2581 Acer truncatum HOM05D003119 ORTHO05D003559 5.8e-77 291.2 186 71.0
arahy.Tifrunner.gnm1.ann1.SMYW0Q Arachis hypogaea HOM05D003119 ORTHO05D003559 5.8e-77 291.2 182 72.5
HanXRQChr16g0524981 Helianthus annuus HOM05D003119 ORTHO05D003559 5.8e-77 291.2 179 73.2
COL.COLO4_04878 Corchorus olitorius HOM05D003119 ORTHO05D003559 7.5e-77 290.8 186 72.0
Medtr3g032980 Medicago truncatula HOM05D003119 ORTHO05D003559 7.5e-77 290.8 185 72.4
SalBow5G4976 Salvia bowleyana HOM05D003119 ORTHO05D003559 7.5e-77 290.8 185 72.4
Ca_14529_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 9.8e-77 290.4 185 71.4
TWI60G0203 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 9.8e-77 290.4 186 72.6
Cpa.g.sc125.32 Carica papaya HOM05D003119 ORTHO05D003559 2.2e-76 289.3 185 71.9
Ciclev10030724m.g Citrus clementina HOM05D003119 ORTHO05D003559 2.2e-76 289.3 186 72.6
MD07G1018700 Malus domestica HOM05D003119 ORTHO05D003559 2.2e-76 289.3 187 70.1
Potri.009G058100 Populus trichocarpa HOM05D003119 ORTHO05D003559 2.2e-76 289.3 189 73.0
QL04p009441 Quercus lobata HOM05D003119 ORTHO05D003559 3.7e-76 288.5 187 70.6
ClCG09G003910 Citrullus lanatus HOM05D003119 ORTHO05D003559 4.9e-76 288.1 185 70.3
CsaV3_7G030810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 4.9e-76 288.1 185 70.8
Sed0001972 Sechium edule HOM05D003119 ORTHO05D003559 4.9e-76 288.1 185 69.7
MELO3C023569.2 Cucumis melo HOM05D003119 ORTHO05D003559 6.4e-76 287.7 185 70.8
Phvul.005G023300 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 6.4e-76 287.7 185 70.8
RcHm_v2.0_Chr1g0317311 Rosa chinensis HOM05D003119 ORTHO05D003559 8.3e-76 287.3 186 71.0
CiPaw.13G007600 Carya illinoinensis HOM05D003119 ORTHO05D003559 1.1e-75 287.0 186 69.4
Sc10g0000230 Simmondsia chinensis HOM05D003119 ORTHO05D003559 1.1e-75 287.0 188 70.7
MSTRG.20565 Avicennia marina HOM05D003119 ORTHO05D003559 1.4e-75 286.6 185 69.7
Glyma.10G091000 Glycine max HOM05D003119 ORTHO05D003559 1.4e-75 286.6 185 69.2
Nn7g36274 Nelumbo nucifera HOM05D003119 ORTHO05D003559 1.9e-75 286.2 184 71.7
VMungo1080G0526 Vigna mungo HOM05D003119 ORTHO05D003559 1.9e-75 286.2 185 69.7
AUR62009404 Chenopodium quinoa HOM05D003119 ORTHO05D003559 4.1e-75 285.0 185 70.3
AUR62023087 Chenopodium quinoa HOM05D003119 ORTHO05D003559 5.4e-75 284.6 186 69.4
Haze_03156 Corylus avellana HOM05D003119 ORTHO05D003559 9.2e-75 283.9 186 69.4
CiPaw.14G002300 Carya illinoinensis HOM05D003119 ORTHO05D003559 1.2e-74 283.5 186 69.4
THA.LOC104809848 Tarenaya hassleriana HOM05D003119 ORTHO05D003559 1.6e-74 283.1 186 67.7
Sabra09G0042700 Salix brachista HOM05D003119 ORTHO05D003559 2.1e-74 282.7 186 71.5
PGR031G0137 Punica granatum HOM05D003119 ORTHO05D003559 7.8e-74 280.8 186 68.8
FAN10G2435 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.3e-73 280.0 186 69.4
Cfa010802 Carpinus fangiana HOM05D003119 ORTHO05D003559 1.7e-73 279.6 186 67.7
PSO063G0387 Papaver somniferum HOM05D003119 ORTHO05D003559 1.7e-73 279.6 185 69.7
FvH4_7g01470 Fragaria vesca HOM05D003119 ORTHO05D003559 2.3e-73 279.3 186 69.4
FAN06G3340 Fragaria x ananassa HOM05D003119 ORTHO05D003559 2.3e-73 279.3 186 69.4
Sp6g30330 Schrenkiella parvula HOM05D003119 ORTHO05D003559 2.3e-73 279.3 185 67.0
CARHR199750 Cardamine hirsuta HOM05D003119 ORTHO05D003559 3.0e-73 278.9 178 69.1
CDE07G0712 Ceratophyllum demersum HOM05D003119 ORTHO05D003559 3.9e-73 278.5 184 70.7
FAN01G1325 Fragaria x ananassa HOM05D003119 ORTHO05D003559 6.6e-73 277.7 186 68.8
Lalb_Chr04g0263891 Lupinus albus HOM05D003119 ORTHO05D003559 1.1e-72 276.9 184 68.5
EL10Ac2g04355 Beta vulgaris HOM05D003119 ORTHO05D003559 1.5e-72 276.6 185 66.5
AL6G24300 Arabidopsis lyrata HOM05D003119 ORTHO05D003559 3.3e-72 275.4 176 69.9
Aqoxy4G00031 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 5.6e-72 274.6 185 69.7
Thhalv10012727m.g Eutrema salsugineum HOM05D003119 ORTHO05D003559 9.5e-72 273.9 185 66.5
AUR62029809 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.6e-71 273.1 186 66.7
Carub.0006s1185 Capsella rubella HOM05D003119 ORTHO05D003559 2.1e-71 272.7 176 68.8
ATR0626G097 Amborella trichopoda HOM05D003119 ORTHO05D003559 2.8e-71 272.3 184 66.3
AT5G13690 Arabidopsis thaliana HOM05D003119 ORTHO05D003559 4.7e-71 271.6 176 69.9
C02p06360 Brassica napus HOM05D003119 ORTHO05D003559 1.4e-70 270.0 185 65.9
BolC2t06579H Brassica oleracea HOM05D003119 ORTHO05D003559 1.8e-70 269.6 176 68.8
BcaNung04192 Brassica carinata HOM05D003119 ORTHO05D003559 6.8e-70 267.7 185 64.9
Actinidia04960 Actinidia chinensis HOM05D003119 ORTHO05D003559 1.2e-69 266.9 183 66.7
SEGI_13141 Sequoiadendron giganteum HOM05D003119 ORTHO05D003559 1.5e-69 266.5 187 64.2
Potri.012G075932 Populus trichocarpa HOM05D003119 ORTHO05D003559 2.6e-69 265.8 183 67.8
Aqoxy3G03116 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 4.4e-69 265.0 185 67.0
BraA02t05183Z Brassica rapa HOM05D003119 ORTHO05D003559 4.4e-69 265.0 177 68.4
Nitab4.5_0003386g0030 Nicotiana tabacum HOM05D003119 ORTHO05D003559 4.4e-69 265.0 183 67.2
CANSAT80G1880 Cannabis sativa HOM05D003119 ORTHO05D003559 7.6e-69 264.2 187 65.8
Rhsim08G0167900 Rhododendron simsii HOM05D003119 ORTHO05D003559 7.6e-69 264.2 182 67.6
Dinv20699 Davidia involucrata HOM05D003119 ORTHO05D003559 9.9e-69 263.8 183 67.2
Sopen03g032890 Solanum pennellii HOM05D003119 ORTHO05D003559 9.9e-69 263.8 183 67.8
GSVIVG01007826001 Vitis vinifera HOM05D003119 ORTHO05D003559 1.7e-68 263.1 183 68.3
Zm00001eb394460 Zea mays HOM05D003119 ORTHO05D003559 1.7e-68 263.1 185 69.2
TAR629G2536 Trochodendron aralioides HOM05D003119 ORTHO05D003559 2.2e-68 262.7 185 66.5
A02p02110 Brassica napus HOM05D003119 ORTHO05D003559 2.9e-68 262.3 177 67.8
QL10p012342 Quercus lobata HOM05D003119 ORTHO05D003559 2.9e-68 262.3 183 66.7
CSS0022012 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 4.9e-68 261.5 183 66.7
Lsat_1_v5_gn_4_73520 Lactuca sativa HOM05D003119 ORTHO05D003559 4.9e-68 261.5 183 66.1
Peaxi162Scf00017g02524 Petunia axillaris HOM05D003119 ORTHO05D003559 6.4e-68 261.2 183 67.2
vmacro13692 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 6.4e-68 261.2 275 50.2
Atru.chr9.2402 Acer truncatum HOM05D003119 ORTHO05D003559 2.4e-67 259.2 184 66.3
Lj1g0014859 Lotus japonicus HOM05D003119 ORTHO05D003559 4.1e-67 258.5 185 65.4
Manes.14G070200 Manihot esculenta HOM05D003119 ORTHO05D003559 4.1e-67 258.5 183 63.9
Oeu018528.1 Olea europaea HOM05D003119 ORTHO05D003559 4.1e-67 258.5 185 64.3
PSO832G2904 Papaver somniferum HOM05D003119 ORTHO05D003559 4.1e-67 258.5 185 66.5
Solyc03g150154.1 Solanum lycopersicum HOM05D003119 ORTHO05D003559 4.1e-67 258.5 183 66.7
Cc04_g12970 Coffea canephora HOM05D003119 ORTHO05D003559 7.1e-67 257.7 183 67.2
CAN.G853.14 Capsicum annuum HOM05D003119 ORTHO05D003559 1.2e-66 256.9 183 65.6
Sed0021395 Sechium edule HOM05D003119 ORTHO05D003559 1.2e-66 256.9 183 66.7
AagrBONN_evm.TU.Sc2ySwM_362.673 Anthoceros agrestis HOM05D003119 ORTHO05D003559 3.5e-66 255.4 186 65.1
Mapoly0144s0027 Marchantia polymorpha HOM05D003119 ORTHO05D003559 3.5e-66 255.4 179 66.5
Prupe.5G179300 Prunus persica HOM05D003119 ORTHO05D003559 3.5e-66 255.4 184 65.2
Thecc.03G004100 Theobroma cacao HOM05D003119 ORTHO05D003559 3.5e-66 255.4 184 63.6
TWI15G0194 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 6.0e-66 254.6 183 65.6
Eucgr.B00338 Eucalyptus grandis HOM05D003119 ORTHO05D003559 7.8e-66 254.2 183 65.0
COL.COLO4_21430 Corchorus olitorius HOM05D003119 ORTHO05D003559 1.0e-65 253.8 187 63.6
HanXRQChr09g0271871 Helianthus annuus HOM05D003119 ORTHO05D003559 1.0e-65 253.8 183 64.5
ECA232G0870 Erigeron canadensis HOM05D003119 ORTHO05D003559 1.7e-65 253.1 183 64.5
CsaV3_1G001810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 3.0e-65 252.3 183 64.5
PGR083G0248 Punica granatum HOM05D003119 ORTHO05D003559 5.1e-65 251.5 183 62.8
Lj9C454T4 Lonicera japonica HOM05D003119 ORTHO05D003559 8.6e-65 250.8 183 66.1
MD14G1187100 Malus domestica HOM05D003119 ORTHO05D003559 8.6e-65 250.8 183 65.0
arahy.Tifrunner.gnm1.ann1.7YSS56 Arachis hypogaea HOM05D003119 ORTHO05D003559 1.5e-64 250.0 183 63.4
arahy.Tifrunner.gnm1.ann1.MYUF54 Arachis hypogaea HOM05D003119 ORTHO05D003559 2.5e-64 249.2 183 63.9
DCAR_026104 Daucus carota HOM05D003119 ORTHO05D003559 2.5e-64 249.2 184 63.0
Glyma.06G186000 Glycine max HOM05D003119 ORTHO05D003559 2.5e-64 249.2 184 63.6
FAN18G1370 Fragaria x ananassa HOM05D003119 ORTHO05D003559 3.3e-64 248.8 184 65.2
Pp3c17_12040 Physcomitrium patens HOM05D003119 ORTHO05D003559 3.3e-64 248.8 185 61.6
FAN01G3156 Fragaria x ananassa HOM05D003119 ORTHO05D003559 4.3e-64 248.4 198 62.6
Gohir.D07G074200 Gossypium hirsutum HOM05D003119 ORTHO05D003559 4.3e-64 248.4 184 62.0
TPR.G31478 Trifolium pratense HOM05D003119 ORTHO05D003559 4.3e-64 248.4 186 61.8
Ciclev10018883m.g Citrus clementina HOM05D003119 ORTHO05D003559 5.6e-64 248.1 183 62.8
FAN13G2511 Fragaria x ananassa HOM05D003119 ORTHO05D003559 7.3e-64 247.7 184 65.2
Duzib205G0437 Durio zibethinus HOM05D003119 ORTHO05D003559 9.6e-64 247.3 183 61.7
FvH4_5g16380 Fragaria vesca HOM05D003119 ORTHO05D003559 9.6e-64 247.3 184 65.2
SalBow3G3123 Salvia bowleyana HOM05D003119 ORTHO05D003559 9.6e-64 247.3 196 60.2
ClCG06G016700 Citrullus lanatus HOM05D003119 ORTHO05D003559 2.8e-63 245.7 183 63.9
Gorai.001G078400 Gossypium raimondii HOM05D003119 ORTHO05D003559 6.2e-63 244.6 184 61.4
VMungo1309G0904 Vigna mungo HOM05D003119 ORTHO05D003559 1.1e-62 243.8 190 61.1
RcHm_v2.0_Chr7g0179731 Rosa chinensis HOM05D003119 ORTHO05D003559 2.4e-62 242.7 183 63.9
Psat0s489g0080 Pisum sativum HOM05D003119 ORTHO05D003559 5.2e-62 241.5 183 62.3
Zm00001eb068240 Zea mays HOM05D003119 ORTHO05D003559 2.6e-61 239.2 178 61.2
Aa31sc576G10 Aethionema arabicum HOM05D003119 ORTHO05D003559 5.8e-61 238.0 188 61.7
Cpa.g.sc35.44 Carica papaya HOM05D003119 ORTHO05D003559 2.9e-60 235.7 182 62.1
unitig_61.g26361 Utricularia gibba HOM05D003119 ORTHO05D003559 3.8e-60 235.3 149 71.1
HPP92_012082 Vanilla planifolia HOM05D003119 ORTHO05D003559 4.9e-60 235.0 154 69.5
Medtr3g078410 Medicago truncatula HOM05D003119 ORTHO05D003559 7.8e-58 227.6 184 58.7
QL04p009329 Quercus lobata HOM05D003119 ORTHO05D003559 7.8e-58 227.6 185 61.6
vmacro19356 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 8.7e-57 224.2 150 68.0
HanXRQChr09g0271861 Helianthus annuus HOM05D003119 ORTHO05D003559 2.8e-55 219.2 147 68.7
Lj7C574T11 Lonicera japonica HOM05D003119 ORTHO05D003559 8.1e-55 217.6 111 83.8
Sabra12G0054100 Salix brachista HOM05D003119 ORTHO05D003559 6.9e-54 214.5 166 60.8
SMO141G0099 Selaginella moellendorffii HOM05D003119 ORTHO05D003559 9.0e-54 214.2 175 54.9
DCAR_003225 Daucus carota HOM05D003119 ORTHO05D003559 3.4e-53 212.2 111 82.0
ATR0712G088 Amborella trichopoda HOM05D003119 ORTHO05D003559 7.6e-53 211.1 116 76.7
Nitab4.5_0008927g0020 Nicotiana tabacum HOM05D003119 ORTHO05D003559 6.4e-52 208.0 111 82.0
Peaxi162Scf00694g00125 Petunia axillaris HOM05D003119 ORTHO05D003559 6.4e-52 208.0 185 60.5
MBI14_g41235_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 1.9e-51 206.5 113 81.4
Ca_16209_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 1.7e-49 199.9 111 77.5
FAN08G2581 Fragaria x ananassa HOM05D003119 ORTHO05D003559 6.9e-46 188.0 184 54.9
Haze_07437 Corylus avellana HOM05D003119 ORTHO05D003559 1.0e-41 174.1 147 57.8
MELO3C017123.2 Cucumis melo HOM05D003119 ORTHO05D003559 1.6e-39 166.8 143 57.3
Eucgr.G03358 Eucalyptus grandis HOM05D003119 ORTHO05D003559 3.4e-37 159.1 186 46.2
TPR.G228 Trifolium pratense HOM05D003119 ORTHO05D003559 1.7e-36 156.8 109 65.1
MCO16G065 Micromonas commoda HOM05D003119 ORTHO05D003559 3.4e-29 132.5 171 42.7
Migut.D01907 Erythranthe guttata HOM05D003119 ORTHO05D003559 1.4e-22 110.5 188 35.1
HPP92_012081 Vanilla planifolia HOM05D003119 ORTHO05D003559 8.8e-17 91.3 45 82.2
Os04g0650900 Oryza sativa ssp. japonica HOM05D003119 ORTHO05D003559 1.5e-16 90.5 39 94.9
Eucgr.J01382 Eucalyptus grandis HOM05D003119 ORTHO05D003559 1.3e-15 87.4 75 54.7
MD02G1306300 Malus domestica HOM05D003119 ORTHO05D003559 9.1e-14 81.3 41 75.6
Psat1g147240 Pisum sativum HOM05D003119 ORTHO05D003559 1.4e-11 73.9 51 62.7


User provided reference genes

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