Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.7e-58 228.0 118 100.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.2e-57 223.4 118 97.5
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 9.2e-49 196.8 118 85.6
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 4.7e-45 184.5 111 83.8
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.4e-44 183.0 111 85.6
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.2e-43 179.9 111 82.0
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.5e-43 179.5 111 82.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 3.6e-37 158.3 120 70.8
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.4e-35 151.8 122 68.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 8.4e-34 147.1 117 70.1
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 9.2e-33 143.7 115 67.0
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.1e-32 142.5 118 68.6
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.7e-32 142.1 119 64.7
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 4.6e-32 141.4 121 65.3
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.3e-31 139.8 119 66.4
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.3e-31 139.0 116 66.4
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 3.0e-31 138.7 119 65.5
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.9e-31 138.3 122 64.8
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.1e-31 137.9 120 65.8
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 6.6e-31 137.5 116 61.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 6.6e-31 137.5 122 63.9
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.6e-31 137.5 122 63.9
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-30 136.3 116 59.5
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.5e-30 136.3 111 68.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.5e-30 136.3 119 62.2
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.5e-30 136.3 120 66.7
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.5e-30 136.3 119 66.4
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.5e-30 135.6 116 65.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.5e-30 135.6 119 64.7
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.3e-30 135.2 111 66.7
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.3e-30 135.2 116 62.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 4.3e-30 134.8 111 69.4
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.3e-30 134.8 116 65.5
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 4.3e-30 134.8 116 65.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 5.6e-30 134.4 115 62.6
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 5.6e-30 134.4 116 65.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 5.6e-30 134.4 121 61.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 7.3e-30 134.0 119 62.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 7.3e-30 134.0 119 59.7
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 7.3e-30 134.0 117 60.7
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 7.3e-30 134.0 117 60.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 9.6e-30 133.7 116 64.7
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 9.6e-30 133.7 118 62.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.2e-29 133.3 118 63.6
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.2e-29 133.3 113 61.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.2e-29 133.3 121 63.6
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.2e-29 133.3 109 66.1
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.6e-29 132.9 121 62.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.1e-29 132.5 119 62.2
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.8e-29 132.1 116 62.9
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 4.7e-29 131.3 122 62.3
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 6.2e-29 131.0 121 58.7
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.2e-29 131.0 114 59.6
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 8.1e-29 130.6 116 63.8
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.1e-28 130.2 116 62.9
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.1e-28 130.2 116 57.8
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.1e-28 130.2 79 79.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.4e-28 129.8 119 62.2
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.8e-28 129.4 109 57.8
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-28 129.4 116 62.9
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.8e-28 129.4 79 78.5
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.8e-28 129.4 79 78.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.1e-28 128.6 119 58.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.1e-28 128.6 91 68.1
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.0e-28 128.3 122 63.1
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 5.2e-28 127.9 73 84.9
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.2e-28 127.9 119 63.0
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 6.9e-28 127.5 122 59.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.9e-28 127.5 132 54.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 8.9e-28 127.1 120 61.7
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 8.9e-28 127.1 112 62.5
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 8.9e-28 127.1 118 57.6
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.5e-27 126.3 118 61.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 79 75.9
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 121 55.4
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.0e-27 125.9 80 76.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.6e-27 125.6 121 57.9
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.6e-27 125.6 125 60.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.6e-27 125.6 113 60.2
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 3.4e-27 125.2 119 58.0
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 4.4e-27 124.8 119 58.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 7.6e-27 124.0 120 57.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 7.6e-27 124.0 112 62.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 4.9e-26 121.3 120 59.2
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 4.9e-26 121.3 80 72.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 6.4e-26 120.9 111 59.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 6.4e-26 120.9 112 61.6
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.1e-25 120.2 117 59.0
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.1e-25 120.2 118 59.3
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.4e-25 119.8 120 60.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.9e-25 119.4 115 58.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.9e-25 119.4 79 74.7
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.9e-25 119.4 79 74.7
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.9e-25 119.4 79 74.7
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.4e-25 119.0 119 57.1
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 3.2e-25 118.6 115 54.8
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 3.2e-25 118.6 80 72.5
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 4.2e-25 118.2 116 56.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 4.2e-25 118.2 116 56.0
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.2e-25 118.2 117 58.1
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 5.4e-25 117.9 118 59.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 5.4e-25 117.9 86 64.0
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 7.1e-25 117.5 119 58.8
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 9.3e-25 117.1 119 58.8
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-24 116.7 118 55.9
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-24 116.7 118 55.9
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.2e-24 116.7 118 55.9
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 4.6e-24 114.8 117 56.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.0e-24 114.4 119 57.1
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 7.8e-24 114.0 116 56.9
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-23 112.8 145 50.3
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.7e-23 112.8 64 82.8
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.0e-23 112.1 120 52.5
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.9e-22 109.4 123 50.4
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.5e-22 109.0 98 64.3
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.3e-22 108.6 111 56.8
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.3e-22 108.2 110 55.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 9.6e-22 107.1 73 68.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.3e-21 106.7 97 61.9
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.6e-21 105.1 91 58.2
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.1e-20 103.6 81 63.0
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.0e-20 101.7 68 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 6.9e-20 100.9 75 64.0
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 9.0e-20 100.5 87 63.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 4.5e-19 98.2 71 64.8
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 4.5e-19 98.2 59 78.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.2e-18 95.9 116 47.4
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.9e-18 95.5 54 83.3
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 7.1e-17 90.9 99 49.5
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.1e-17 90.9 97 55.7
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 9.3e-17 90.5 118 48.3
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-15 86.7 64 67.2
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.0e-15 85.5 97 53.6
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.7e-15 84.3 139 43.9
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.8e-13 79.0 107 48.6
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.3e-10 70.1 88 46.6
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 5.1e-07 58.2 80 37.5
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 9.6e-06 53.9 73 39.7


User provided reference genes

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