Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 0.0e+00 1270.4 816 100.0
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.2e-295 1018.8 818 84.7
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 8.9e-276 953.7 799 82.5
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 3.9e-255 885.2 811 69.2
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 6.4e-242 841.3 811 68.9
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 3.5e-240 835.5 796 70.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.3e-194 684.1 797 56.2
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.0e-191 672.5 797 57.6
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-180 637.9 795 59.1
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.4e-180 637.5 739 61.8
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 2.9e-178 629.8 792 56.2
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.0e-174 617.1 823 51.9
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.7e-173 614.0 799 54.6
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 2.7e-171 606.7 773 55.8
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.9e-170 603.2 802 54.5
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 5.0e-170 602.4 797 57.0
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.9e-169 600.5 798 54.1
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 3.3e-169 599.7 822 52.4
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.6e-168 597.4 792 51.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 6.8e-167 592.0 803 52.6
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.8e-164 583.9 806 56.1
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 9.2e-164 581.6 793 55.2
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.2e-163 581.3 789 52.3
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 3.5e-163 579.7 782 53.7
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.9e-162 576.2 606 63.4
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.3e-159 567.0 800 50.9
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 3.4e-158 563.1 758 57.1
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.7e-157 560.8 805 53.0
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.2e-157 560.5 789 52.6
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.9e-157 560.1 798 54.1
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 8.3e-157 558.5 805 53.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 3.2e-156 556.6 795 54.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 5.4e-156 555.8 802 52.9
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.5e-155 553.1 747 53.1
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.7e-154 550.8 795 51.9
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 3.0e-154 550.1 747 52.7
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 3.9e-154 549.7 798 50.0
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.5e-153 547.0 797 50.7
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 7.3e-153 545.4 783 54.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.2e-152 544.7 785 53.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.6e-152 544.3 763 52.2
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 6.2e-152 542.3 773 56.1
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.1e-151 541.6 787 52.7
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.2e-150 538.1 788 53.3
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.9e-149 532.7 805 52.3
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.1e-148 531.6 788 50.8
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 7.1e-148 528.9 789 49.6
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.6e-147 527.7 789 52.3
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 6.6e-146 522.3 805 49.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.5e-145 520.4 810 49.0
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 5.6e-145 519.2 773 52.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.6e-145 519.2 788 48.5
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.6e-144 517.7 762 52.5
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.1e-144 515.4 788 50.0
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.4e-143 514.6 787 52.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.4e-143 513.8 787 52.5
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.4e-142 510.0 788 50.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.4e-142 510.0 763 49.9
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 9.9e-142 508.4 763 53.3
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-141 506.5 804 50.0
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-141 506.5 804 50.0
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 4.9e-141 506.1 796 54.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.4e-140 504.6 810 49.6
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.2e-139 501.5 802 51.7
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 4.6e-139 499.6 810 49.6
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 4.6e-139 499.6 792 48.2
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.8e-139 498.8 802 49.4
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 5.1e-138 496.1 788 48.1
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 6.6e-138 495.7 782 50.6
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.9e-137 494.2 785 55.0
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.5e-137 493.8 853 45.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.2e-136 491.5 745 49.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.1e-135 488.4 764 50.7
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.4e-135 488.0 787 51.1
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 9.0e-135 485.3 794 51.6
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.4e-132 478.0 796 50.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 5.1e-130 469.5 799 44.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.3e-128 464.9 805 47.8
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 8.1e-128 462.2 794 49.1
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.0e-127 458.8 796 48.2
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.5e-126 458.0 761 53.1
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.4e-126 456.8 781 48.4
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.2e-124 449.9 792 46.6
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.8e-122 444.5 725 48.0
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.8e-120 437.2 745 46.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.4e-119 434.1 750 46.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-117 428.3 743 46.3
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.7e-117 427.9 754 46.2
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.1e-116 425.2 844 43.2
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 6.0e-115 419.5 813 41.6
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 7.4e-113 412.5 749 46.7
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 2.4e-111 407.5 792 43.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.5e-110 404.8 762 39.9
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.2e-109 401.0 801 42.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 7.1e-108 396.0 784 50.6
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 7.6e-102 375.9 503 49.7
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 2.5e-100 370.9 775 38.7
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.8e-93 347.1 803 38.9
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 5.1e-90 336.7 421 51.1
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.7e-88 331.6 688 37.2
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.3e-80 305.4 665 37.9
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.0e-73 281.6 782 34.1
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 6.3e-72 276.6 833 30.9
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-68 265.4 553 45.2
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 2.2e-64 251.5 553 44.1
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.5e-54 217.6 276 47.8
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 2.3e-53 214.9 524 40.8
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.8e-53 214.2 210 61.9
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.6e-52 210.3 252 50.0
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 5.6e-52 210.3 777 31.7
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.9e-48 198.0 374 54.3
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.9e-45 187.6 191 59.7
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 6.8e-42 176.8 204 52.5
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.9e-42 176.4 366 48.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.0e-37 162.9 216 54.6
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-34 151.0 384 36.5
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.6e-30 139.0 132 61.4
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.5e-28 131.7 180 53.9
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 5.4e-23 114.0 137 55.5
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 7.8e-22 110.2 165 46.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.0e-21 108.2 179 41.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 3.3e-20 104.8 274 46.4
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.8e-18 99.0 124 50.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.4e-17 94.7 167 39.5
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 4.9e-16 90.9 143 44.1
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 8.4e-16 90.1 81 59.3
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-10 73.2 42 83.3
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.8e-10 72.4 151 37.1
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.1e-10 71.6 134 36.6
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 5.3e-10 70.9 42 83.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 9.0e-10 70.1 95 64.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.4e-09 68.2 101 40.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 3.8e-08 64.7 177 35.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.8e-08 64.7 177 35.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 1.9e-07 62.4 52 67.3
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 5.4e-07 60.8 47 70.2


User provided reference genes

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