Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.2e-96 354.8 190 100.0
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.0e-90 335.9 190 94.7
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 6.0e-74 281.2 192 76.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.3e-73 280.0 191 83.8
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.6e-73 277.3 190 83.7
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 4.4e-69 265.0 191 80.1
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.7e-65 253.1 200 71.0
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 2.1e-58 229.6 197 71.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 4.6e-58 228.4 191 66.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 6.0e-58 228.0 194 66.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.0e-57 227.3 196 65.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 8.7e-57 224.2 193 63.2
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.5e-56 223.4 191 68.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.6e-55 218.8 192 63.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 3.6e-55 218.8 195 64.6
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 4.8e-55 218.4 191 63.9
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 8.1e-55 217.6 194 62.4
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.1e-54 217.2 193 66.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 2.4e-54 216.1 190 64.7
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.0e-53 213.0 199 60.3
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.6e-53 212.6 198 61.6
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 9.9e-53 210.7 200 65.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 1.3e-52 210.3 195 65.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.7e-52 209.9 192 65.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 6.4e-52 208.0 196 63.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 6.4e-52 208.0 190 66.3
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.4e-52 208.0 190 66.3
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.4e-52 208.0 190 66.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.9e-51 206.5 190 62.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 3.2e-51 205.7 194 58.8
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.6e-50 203.4 191 64.9
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.1e-50 203.0 194 59.8
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.1e-50 203.0 191 64.4
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 6.0e-50 201.4 190 65.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 6.0e-50 201.4 193 58.0
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 6.0e-50 201.4 193 58.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.0e-50 201.4 191 65.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 6.0e-50 201.4 191 63.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 7.9e-50 201.1 196 64.3
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.0e-49 200.7 194 58.2
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.0e-49 200.7 205 59.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-49 200.3 191 65.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.3e-49 199.5 191 66.0
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.3e-49 199.5 193 64.8
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.0e-49 199.1 190 57.9
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 5.1e-49 198.4 193 60.6
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 5.1e-49 198.4 190 62.1
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 6.6e-49 198.0 194 58.2
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 8.7e-49 197.6 170 62.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.5e-48 196.8 191 58.1
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.9e-48 196.4 199 58.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 4.3e-48 195.3 198 58.6
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 5.6e-48 194.9 193 58.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.1e-47 193.0 192 60.4
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.8e-47 192.6 192 63.0
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.6e-47 192.2 194 62.9
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.6e-47 192.2 191 60.2
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 6.2e-47 191.4 193 59.1
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.1e-46 190.7 193 57.5
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.4e-46 190.3 193 60.6
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.4e-46 190.3 195 63.1
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.8e-46 189.9 196 61.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 4.0e-46 188.7 192 58.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.5e-45 186.8 192 57.3
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.3e-44 183.7 192 55.7
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.2e-44 183.0 191 64.4
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 2.9e-44 182.6 194 58.8
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.4e-43 180.3 186 57.0
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.4e-43 180.3 199 59.3
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 1.9e-43 179.9 190 58.4
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 5.5e-43 178.3 197 56.3
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 9.3e-43 177.6 191 56.5
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 9.3e-43 177.6 209 52.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.6e-42 176.8 198 57.1
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.0e-42 174.9 192 52.1
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 6.0e-42 174.9 190 56.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 7.9e-42 174.5 197 56.9
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 3.0e-41 172.6 193 58.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 5.1e-41 171.8 205 54.1
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-40 170.6 208 60.6
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.5e-40 170.2 199 53.8
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 2.5e-40 169.5 201 61.2
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 4.3e-40 168.7 199 53.3
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.3e-39 167.2 190 55.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.3e-39 167.2 215 48.8
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-38 164.1 194 52.1
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.1e-38 164.1 194 52.1
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.1e-38 164.1 193 54.4
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.8e-38 163.3 207 54.6
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.4e-38 162.9 193 53.4
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.3e-38 161.8 191 51.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.2e-37 160.6 195 53.8
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.2e-37 160.6 195 53.8
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.4e-37 159.1 189 51.9
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 7.6e-37 157.9 195 52.3
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-36 157.1 194 55.2
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-36 157.1 194 55.2
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.9e-36 156.0 200 49.5
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 6.5e-36 154.8 209 53.1
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.2e-35 152.1 211 49.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.5e-35 151.8 198 50.5
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.2e-34 150.6 201 55.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.3e-33 146.4 210 48.6
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.3e-33 146.4 191 48.2
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.1e-32 144.1 197 46.7
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.1e-32 144.1 193 47.2
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.6e-31 140.2 190 50.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.1e-31 139.8 199 47.7
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 2.1e-31 139.8 197 48.7
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.2e-31 137.9 206 46.6
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.2e-31 137.9 190 45.3
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.4e-30 137.1 196 50.5
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.4e-30 137.1 196 50.5
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.4e-30 137.1 196 50.5
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.1e-30 136.0 220 45.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.1e-30 136.0 220 45.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 5.3e-30 135.2 211 46.0
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 9.0e-30 134.4 196 49.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 2.6e-29 132.9 194 48.5
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-29 132.1 197 46.7
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 5.9e-29 131.7 192 48.4
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 7.6e-29 131.3 196 48.5
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.2e-28 129.8 197 46.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.9e-28 129.4 210 44.3
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.9e-28 129.4 186 43.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-28 129.0 225 44.0
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 3.8e-28 129.0 207 44.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.2e-27 125.9 222 42.3
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.1e-26 123.2 207 45.4
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 4.6e-26 122.1 78 75.6
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.5e-24 117.1 130 56.9
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 3.3e-24 115.9 192 43.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.7e-23 112.5 194 41.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.6e-21 106.3 148 53.4
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 2.9e-20 102.8 194 40.2
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-19 100.9 165 40.6
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 1.6e-18 97.1 171 38.6
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.0e-17 92.8 187 37.4
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 1.5e-16 90.5 206 37.4
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.5e-16 89.7 61 72.1
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 4.3e-16 89.0 94 52.1
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.3e-16 89.0 67 68.7
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 6.3e-15 85.1 62 72.6
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 4.1e-14 82.4 161 44.1
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.0e-12 77.8 44 77.3
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 4.2e-11 72.4 190 33.7
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 5.5e-11 72.0 194 31.4
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 2.1e-10 70.1 189 32.3
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 3.6e-10 69.3 190 34.2
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 4.7e-10 68.9 189 34.4
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 2.0e-08 63.5 188 29.8
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.6e-08 63.2 187 30.5
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 3.3e-08 62.8 193 27.5
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 3.3e-08 62.8 187 28.9
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 4.4e-08 62.4 190 27.9
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 5.7e-08 62.0 188 29.3
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 5.7e-08 62.0 188 29.3
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 7.4e-08 61.6 191 29.8
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 1.3e-07 60.8 190 29.5
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 1.7e-07 60.5 190 30.0
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 2.2e-07 60.1 193 30.1
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 2.8e-07 59.7 188 31.4
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 6.3e-07 58.5 187 29.9
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 8.2e-07 58.2 190 30.0
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.1e-06 57.8 180 31.1
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 1.4e-06 57.4 196 30.1
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.4e-06 57.4 191 31.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.8e-06 57.0 188 30.3
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.8e-06 57.0 188 30.3
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 1.8e-06 57.0 189 30.2
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.4e-06 56.6 188 31.9
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.1e-06 56.2 189 28.0
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 4.1e-06 55.8 188 32.4
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.3e-06 55.5 190 27.4
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.3e-06 55.5 191 28.8
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 7.0e-06 55.1 195 32.8


User provided reference genes

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