Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1727.6 839 100.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1660.6 838 96.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1602.4 827 93.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1584.3 836 91.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1577.8 827 91.9
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1569.3 827 92.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1368.2 829 79.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1345.5 838 74.5
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1330.1 828 75.6
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1325.5 835 75.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1323.5 828 75.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1320.4 840 74.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1318.9 825 76.1
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1307.7 833 74.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1305.0 834 74.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1304.3 831 74.4
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 839 73.7
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1300.0 833 75.0
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 832 74.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1297.0 831 74.1
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1293.9 834 74.1
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1292.7 839 74.4
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1291.9 831 74.8
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1290.8 831 74.7
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 839 74.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 822 74.6
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 839 74.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 834 74.2
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 825 75.3
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1288.5 831 72.7
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1286.6 826 73.4
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 839 73.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 827 75.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 832 73.1
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1282.7 835 73.8
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 829 73.7
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1281.5 833 74.2
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1281.2 832 73.8
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 845 73.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1278.1 835 72.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1277.7 834 72.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1273.8 835 71.9
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1273.8 827 73.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1272.7 839 72.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1263.4 842 71.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1261.5 835 72.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1258.8 835 72.1
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1253.8 964 64.5
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1248.8 834 72.3
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1248.0 829 72.1
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1247.6 832 72.7
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 832 72.2
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1245.0 828 71.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1244.6 831 71.5
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 832 71.9
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1241.1 949 65.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1237.2 831 71.5
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1236.1 833 71.1
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 833 71.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1231.1 833 70.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1230.7 834 71.6
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1230.3 857 68.5
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 832 71.4
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 833 72.1
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 831 70.4
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1227.6 835 70.8
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1224.5 833 70.6
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1223.0 871 68.7
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1219.1 779 75.0
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1216.8 834 70.4
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1202.6 826 70.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1191.8 833 69.1
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1177.9 847 68.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1171.4 830 67.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 832 68.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1160.6 733 74.6
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1160.2 854 67.2
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1155.6 832 66.9
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1151.7 830 66.5
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1147.9 827 66.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 830 66.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1144.4 828 66.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 826 66.7
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 825 66.7
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 832 66.6
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1142.9 829 67.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1142.1 827 66.0
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 827 66.4
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 829 66.8
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1135.2 825 66.4
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1131.3 826 66.1
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1121.7 760 71.7
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1114.8 833 63.7
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1091.3 830 61.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1083.9 829 62.5
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1081.2 827 62.5
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.7e-293 1012.7 666 72.4
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.8e-293 1011.9 842 58.8
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 6.3e-277 957.6 609 74.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.2e-269 932.6 828 58.3
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.2e-269 932.6 584 75.5
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.3e-250 870.2 894 50.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.1e-241 840.5 846 50.5
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.3e-241 838.6 853 51.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 6.9e-223 778.1 828 49.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.1e-175 619.8 461 64.9
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.0e-165 588.2 401 69.1
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-147 527.3 400 64.5
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.6e-134 483.0 358 63.1
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.4e-130 471.5 360 62.5
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.4e-122 444.1 263 77.6
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 3.0e-101 374.0 489 45.4
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.9e-101 373.6 819 33.9
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 9.0e-98 362.5 859 31.2
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.0e-97 361.3 229 75.1
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 9.9e-97 359.0 308 56.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-94 350.5 195 80.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.1e-93 346.7 296 64.2
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.6e-91 341.7 1172 25.9
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.0e-90 337.0 265 60.0
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.0e-89 334.7 192 80.2
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.2e-88 331.3 193 79.8
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 3.2e-87 327.4 785 31.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.5e-79 300.1 237 64.1
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-62 245.7 562 32.7
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 5.3e-50 203.8 193 52.3
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.0e-44 185.3 98 88.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.5e-44 183.3 153 60.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 5.9e-41 173.7 214 43.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 5.9e-41 173.7 214 43.9
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 8.0e-38 163.3 123 64.2
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.0e-37 161.0 97 75.3
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.4e-34 151.8 77 90.9
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.2e-27 128.6 77 77.9
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 4.9e-27 127.5 96 61.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.1e-26 124.4 69 82.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.0e-24 119.8 242 36.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.1e-23 116.3 69 81.2
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-21 109.8 65 69.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 9.8e-20 103.2 150 44.0
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.2e-19 102.1 64 71.9
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.7e-17 95.1 52 76.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 7.8e-17 93.6 147 37.4
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.0e-16 93.2 148 39.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 3.0e-16 91.7 92 48.9
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.8e-13 82.4 100 44.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.2e-12 79.7 59 54.2
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 5.4e-10 70.9 86 47.7
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.1e-07 63.2 105 37.1
Manes.02G089800 Manihot esculenta HOM05D001610 ORTHO05D001585 9.6e-07 60.1 113 32.7
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 6.2e-06 57.4 135 28.1
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 8.1e-06 57.0 139 28.1


User provided reference genes

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