Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000686g0160 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.6e-38 159.8 81 100.0
CAN.G1.14 Capsicum annuum HOM05D000533 ORTHO05D002807 3.0e-27 124.8 70 90.0
SalBow1G1296 Salvia bowleyana HOM05D000533 ORTHO05D002807 4.0e-27 124.4 68 92.6
SalBow1G1594 Salvia bowleyana HOM05D000533 ORTHO05D002807 4.0e-27 124.4 68 92.6
HanXRQChr08g0236071 Helianthus annuus HOM05D000533 ORTHO05D002807 6.8e-27 123.6 70 88.6
HanXRQMTg0579311 Helianthus annuus HOM05D000533 ORTHO05D002807 6.8e-27 123.6 70 88.6
Sc12g0004050 Simmondsia chinensis HOM05D000533 ORTHO05D002807 6.8e-27 123.6 67 94.0
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 8.9e-27 123.2 70 90.0
SabraMtG0003500 Salix brachista HOM05D000533 ORTHO05D002807 8.9e-27 123.2 70 88.6
Ca_03778_v3 Cicer arietinum L. HOM05D008696 ORTHO05D002807 1.2e-26 122.9 70 88.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-26 122.9 70 88.6
Lj5g0015581 Lotus japonicus HOM05D000533 ORTHO05D002807 1.2e-26 122.9 74 85.1
RcHm_v2.0_Chr6g0256751 Rosa chinensis HOM05D000533 ORTHO05D002807 1.2e-26 122.9 70 88.6
RcHm_v2.0_MTg0498831 Rosa chinensis HOM05D000533 ORTHO05D002807 1.2e-26 122.9 70 88.6
CAN.G1673.5 Capsicum annuum HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
CiPaw.16G068400 Carya illinoinensis HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
Lalb_Chr00c21g0405731 Lupinus albus HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
Lalb_Chr00c24g0407091 Lupinus albus HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
Solyc00g094530.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
TPR.G74 Trifolium pratense HOM05D000533 ORTHO05D002807 2.0e-26 122.1 70 88.6
LjContig00315g0001623 Lotus japonicus HOM05D008696 ORTHO05D002807 2.6e-26 121.7 67 92.5
SGA_v2.0_scaffold255G45330 Striga asiatica HOM05D008696 ORTHO05D002807 2.6e-26 121.7 67 92.5
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.6e-26 121.7 67 92.5
Hma1.2p1_1191F.1_g265460 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nn1g09945 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nn1g10033 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nn1g10034 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nn1g10159 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nn1g10187 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
PGR028G0008 Punica granatum HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Sed0014600 Sechium edule HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 87.1
GSVIVG01006663001 Vitis vinifera HOM05D000533 ORTHO05D002807 3.4e-26 121.3 70 88.6
Nitab4.5_0004300g0140 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.7e-26 120.6 70 87.1
SHI50269 Sapria himalayana HOM05D000533 ORTHO05D002807 9.8e-26 119.8 70 84.3
AT2G07785 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
ATMG01275 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
BNapus_Darmor_BZH_scaffold_234p00330 Brassica napus HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
BolSC28t60336H Brassica oleracea HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
BolSC28t60400H Brassica oleracea HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
BraSC159t45722Z Brassica rapa HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
CARHR287220 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
CDE02G0273 Ceratophyllum demersum HOM05D000533 ORTHO05D002807 1.7e-25 119.0 69 87.0
Gorai.001G164200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
Sp3g25800 Schrenkiella parvula HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
unitig_87.g27987 Utricularia gibba HOM05D000533 ORTHO05D002807 1.7e-25 119.0 70 87.1
Nitab4.5_0004100g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.2e-25 118.6 70 84.3
Nitab4.5_0011987g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.2e-25 118.6 70 85.7
COL.COLO4_04416 Corchorus olitorius HOM05D000533 ORTHO05D002807 3.7e-25 117.9 67 89.6
SHI46653 Sapria himalayana HOM05D000533 ORTHO05D002807 4.9e-25 117.5 69 85.5
SHI52701 Sapria himalayana HOM05D000533 ORTHO05D002807 4.9e-25 117.5 70 84.3
SHI35933 Sapria himalayana HOM05D000533 ORTHO05D002807 6.4e-25 117.1 70 84.3
BraSC77t46641Z Brassica rapa HOM05D000533 ORTHO05D002807 1.8e-24 115.5 68 86.8
SHI26814 Sapria himalayana HOM05D000533 ORTHO05D002807 2.4e-24 115.2 70 80.0
BraSC48t46261Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-23 112.5 70 85.7
BraSC77t46669Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-23 112.5 72 83.3
Nitab4.5_0000172g1370 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.0e-23 112.1 70 80.0
PSO541G4958 Papaver somniferum HOM05D000533 ORTHO05D002807 2.7e-23 111.7 70 78.6
Gorai.013G212700 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.5e-23 111.3 70 81.4
Nitab4.5_0000031g0220 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.8e-23 110.2 70 80.0
SHI42029 Sapria himalayana HOM05D000533 ORTHO05D002807 1.7e-22 109.0 70 80.0
Nitab4.5_0000172g0730 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.3e-22 108.6 66 81.8
PSO063G0118 Papaver somniferum HOM05D000533 ORTHO05D002807 2.3e-22 108.6 66 81.8
Nitab4.5_0002325g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.0e-22 108.2 60 91.7
arahy.Tifrunner.gnm1.ann1.P3P6H5 Arachis hypogaea HOM05D009044 ORTHO05D002807 2.5e-21 105.1 62 85.5
Nitab4.5_0000338g0180 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.6e-21 104.0 67 80.6
Nitab4.5_0001796g0260 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.6e-21 104.0 62 85.5
SEGI_03033 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 2.8e-20 101.7 71 76.1
Solyc05g023920.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-20 101.7 70 72.9
SEGI_30332 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 3.6e-20 101.3 69 76.8
SEGI_40319 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 3.6e-20 101.3 69 76.8
Nitab4.5_0000307g0290 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.1e-19 98.2 62 80.6
ClCG09G011440 Citrullus lanatus HOM05D000533 ORTHO05D002807 6.8e-19 97.1 66 80.3
Nitab4.5_0008578g0070 Nicotiana tabacum HOM05D008696 ORTHO05D002807 3.4e-18 94.7 74 71.6
Pp3c11_850 Physcomitrium patens HOM05D000533 ORTHO05D002807 1.1e-16 89.7 63 73.0
Peaxi162Scf01556g00006 Petunia axillaris HOM05D000533 ORTHO05D002807 1.4e-16 89.4 49 91.8
Lalb_Chr07g0184511 Lupinus albus HOM05D000533 ORTHO05D002807 7.0e-16 87.0 52 84.6
SMO053G0011 Selaginella moellendorffii HOM05D002965 ORTHO05D010183 1.4e-11 72.8 69 59.4
Nitab4.5_0004100g0050 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.1e-11 71.6 47 78.7
SHI55136 Sapria himalayana HOM05D000533 ORTHO05D002807 6.8e-11 70.5 44 81.8
Nitab4.5_0000844g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.4e-10 67.8 37 89.2
THA.LOC104820711 Tarenaya hassleriana HOM05D000533 ORTHO05D002807 4.4e-10 67.8 67 49.3
Peaxi162Scf00489g00025 Petunia axillaris HOM05D008696 ORTHO05D002807 1.3e-09 66.2 70 55.7
Nitab4.5_0001607g0120 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.9e-09 65.1 39 79.5
Nitab4.5_0000844g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.4e-09 63.9 37 83.8
SHI34935 Sapria himalayana HOM05D000533 ORTHO05D002807 8.3e-09 63.5 51 62.7
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 5.4e-08 60.8 65 46.2
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 1.2e-07 59.7 68 42.6
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 2.1e-07 58.9 65 44.6
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-07 58.9 65 44.6
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-07 58.9 65 44.6
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-07 58.9 65 44.6
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 2.1e-07 58.9 65 44.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-07 58.9 65 44.6
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 2.7e-07 58.5 65 43.1
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 2.7e-07 58.5 65 43.1
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 3.5e-07 58.2 65 43.1
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 3.5e-07 58.2 63 44.4
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 4.6e-07 57.8 65 43.1
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 4.6e-07 57.8 65 44.6
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 4.6e-07 57.8 65 44.6
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 1.0e-06 56.6 65 43.1
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 1.0e-06 56.6 65 43.1
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.0e-06 56.6 65 43.1
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.0e-06 56.6 65 43.1
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.0e-06 56.6 65 43.1
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.0e-06 56.6 65 43.1
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.0e-06 56.6 65 43.1
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.3e-06 56.2 80 40.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 1.3e-06 56.2 65 41.5
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.7e-06 55.8 61 45.9
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.7e-06 55.8 65 44.6
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.3e-06 55.5 65 41.5
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.0e-06 55.1 65 40.0
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 3.0e-06 55.1 65 40.0
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 3.0e-06 55.1 65 43.1
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.0e-06 55.1 65 41.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.9e-06 54.7 63 44.4
Nn7g35869 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.9e-06 54.7 36 75.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 3.9e-06 54.7 65 41.5
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 5.1e-06 54.3 65 40.0
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 5.1e-06 54.3 65 40.0
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 5.1e-06 54.3 65 41.5
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 5.1e-06 54.3 65 41.5
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 5.1e-06 54.3 63 44.4
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 5.1e-06 54.3 63 41.3
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-06 53.9 63 42.9
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 6.6e-06 53.9 65 44.6
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 6.6e-06 53.9 65 41.5
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 6.6e-06 53.9 65 41.5
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 8.6e-06 53.5 63 42.9
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 8.6e-06 53.5 63 42.9
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 8.6e-06 53.5 63 42.9
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 8.6e-06 53.5 63 44.4
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 8.6e-06 53.5 65 41.5
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 8.6e-06 53.5 65 41.5
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 8.6e-06 53.5 65 41.5


User provided reference genes

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