Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000683g0070 Nicotiana tabacum HOM05D000157 ORTHO05D000311 2.6e-74 282.0 143 100.0
Nitab4.5_0000058g0320 Nicotiana tabacum HOM05D000157 ORTHO05D000311 1.7e-52 209.5 117 94.9
Peaxi162Scf00284g00715 Petunia axillaris HOM05D000157 ORTHO05D000311 8.6e-41 170.6 95 86.3
PGSC0003DMG400015661 Solanum tuberosum HOM05D000086 ORTHO05D000311 4.4e-37 158.3 151 55.6
Cc02_g06240 Coffea canephora HOM05D000086 ORTHO05D000311 7.8e-34 147.5 157 52.2
Sopen06g017190 Solanum pennellii HOM05D000086 ORTHO05D000311 1.0e-33 147.1 157 50.3
Solyc06g051250.1 Solanum lycopersicum HOM05D000086 ORTHO05D000311 1.3e-33 146.7 154 51.9
MSTRG.27319 Avicennia marina HOM05D000157 ORTHO05D000311 8.6e-33 144.1 159 50.9
Dinv10602 Davidia involucrata HOM05D000086 ORTHO05D000311 6.1e-31 137.9 167 47.3
Glyma.18G025700 Glycine max HOM05D000086 ORTHO05D000311 6.8e-30 134.4 159 47.2
Glyma.11G231400 Glycine max HOM05D000086 ORTHO05D000311 1.2e-29 133.7 159 45.9
Lsat_1_v5_gn_2_124020 Lactuca sativa HOM05D000157 ORTHO05D000311 5.8e-29 131.3 160 46.9
Oeu034917.1 Olea europaea HOM05D000086 ORTHO05D000311 9.8e-29 130.6 158 48.1
Thecc.10G013500 Theobroma cacao HOM05D000157 ORTHO05D000311 1.1e-27 127.1 158 43.0
Migut.F00662 Erythranthe guttata HOM05D000157 ORTHO05D000311 1.4e-27 126.7 170 43.5
Medtr3g071300 Medicago truncatula HOM05D000157 ORTHO05D000311 4.1e-27 125.2 155 43.9
Atru.chr12.91 Acer truncatum HOM05D000086 ORTHO05D000311 7.0e-27 124.4 168 43.5
VMungo1383G2255 Vigna mungo HOM05D000157 ORTHO05D000311 7.0e-27 124.4 159 44.0
HanXRQChr14g0459461 Helianthus annuus HOM05D000086 ORTHO05D000311 9.2e-27 124.0 156 44.9
Phvul.001G244600 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 1.2e-26 123.6 159 45.3
QL08p063447 Quercus lobata HOM05D000157 ORTHO05D000311 2.0e-26 122.9 166 44.6
Sed0024787 Sechium edule HOM05D000157 ORTHO05D000311 2.0e-26 122.9 155 43.9
Lalb_Chr23g0276961 Lupinus albus HOM05D000157 ORTHO05D000311 2.7e-26 122.5 162 42.6
TPR.G11207 Trifolium pratense HOM05D000086 ORTHO05D000311 2.7e-26 122.5 158 43.7
Oeu004682.1 Olea europaea HOM05D000440 ORTHO05D000311 4.6e-26 121.7 152 49.3
Haze_17247 Corylus avellana HOM05D000157 ORTHO05D000311 1.3e-25 120.2 158 44.9
TAR623G0491 Trochodendron aralioides HOM05D000086 ORTHO05D000311 6.6e-25 117.9 160 40.6
Duzib114G1050 Durio zibethinus HOM05D000157 ORTHO05D000311 8.6e-25 117.5 151 46.4
Nn2g13195 Nelumbo nucifera HOM05D000086 ORTHO05D000311 8.6e-25 117.5 151 41.1
HanXRQChr07g0203161 Helianthus annuus HOM05D000086 ORTHO05D000311 2.5e-24 115.9 156 42.3
Dinv21751 Davidia involucrata HOM05D000157 ORTHO05D000311 3.3e-24 115.5 125 51.2
Gorai.010G195900 Gossypium raimondii HOM05D000157 ORTHO05D000311 4.3e-24 115.2 151 43.7
Ca_15137_v3 Cicer arietinum L. HOM05D000086 ORTHO05D000311 5.6e-24 114.8 157 40.1
Hund13881 Selenicereus undatus HOM05D000086 ORTHO05D000311 5.6e-24 114.8 157 42.0
COL.COLO4_00279 Corchorus olitorius HOM05D000086 ORTHO05D000311 7.3e-24 114.4 161 42.2
Gohir.D06G168000 Gossypium hirsutum HOM05D000157 ORTHO05D000311 7.3e-24 114.4 151 43.7
Manes.10G010400 Manihot esculenta HOM05D000086 ORTHO05D000311 7.3e-24 114.4 166 41.0
Sabra08G0052300 Salix brachista HOM05D000086 ORTHO05D000311 1.2e-23 113.6 160 42.5
Cfa001299 Carpinus fangiana HOM05D000157 ORTHO05D000311 2.8e-23 112.5 161 42.2
Gohir.A06G162500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 2.8e-23 112.5 151 43.0
Potri.008G071000 Populus trichocarpa HOM05D000086 ORTHO05D000311 2.8e-23 112.5 160 41.2
Rhsim09G0178600 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-23 112.1 159 43.4
Ciclev10032946m.g Citrus clementina HOM05D000157 ORTHO05D000311 8.0e-23 110.9 162 42.0
Lj6g0009441 Lotus japonicus HOM05D000086 ORTHO05D000311 8.0e-23 110.9 156 41.0
Phvul.008G222500 Phaseolus vulgaris HOM05D000086 ORTHO05D000311 1.1e-22 110.5 149 43.0
TAR636G1112 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.8e-22 109.8 151 41.7
TAR636G3133 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.8e-22 109.8 151 41.7
ClCG07G004370 Citrullus lanatus HOM05D000086 ORTHO05D000311 3.1e-22 109.0 160 40.6
Sc10g0002490 Simmondsia chinensis HOM05D000157 ORTHO05D000311 4.0e-22 108.6 154 40.3
MBI15_g13978_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000311 6.8e-22 107.8 145 40.0
vmacro10030 Vaccinium macrocarpon HOM05D000157 ORTHO05D000311 2.0e-21 106.3 150 42.0
MELO3C018366.2 Cucumis melo HOM05D000157 ORTHO05D000311 3.4e-21 105.5 158 41.8
CsaV3_5G010310 Cucumis sativus L. HOM05D000157 ORTHO05D000311 3.4e-21 105.5 158 39.9
RcHm_v2.0_Chr1g0370601 Rosa chinensis HOM05D000157 ORTHO05D000311 4.4e-21 105.1 154 41.6
Gohir.A10G239600 Gossypium hirsutum HOM05D000157 ORTHO05D000311 5.8e-21 104.8 149 40.3
Duzib128G2006 Durio zibethinus HOM05D000086 ORTHO05D000311 7.5e-21 104.4 151 40.4
CANSAT56G0444 Cannabis sativa HOM05D000157 ORTHO05D000311 9.8e-21 104.0 153 37.3
CANSAT56G3355 Cannabis sativa HOM05D000157 ORTHO05D000311 9.8e-21 104.0 153 37.3
Eucgr.J00188 Eucalyptus grandis HOM05D000086 ORTHO05D000311 2.2e-20 102.8 157 39.5
TWI09G1268 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 6.4e-20 101.3 147 44.2
ATR0681G277 Amborella trichopoda HOM05D000086 ORTHO05D000311 8.3e-20 100.9 159 39.0
PGR044G0801 Punica granatum HOM05D000086 ORTHO05D000311 8.3e-20 100.9 161 39.8
Glyma.02G264800 Glycine max HOM05D000440 ORTHO05D000311 2.4e-19 99.4 156 40.4
Peaxi162Scf00484g00008 Petunia axillaris HOM05D000157 ORTHO05D000311 3.2e-19 99.0 95 56.8
Lsat_1_v5_gn_9_62281 Lactuca sativa HOM05D000086 ORTHO05D000311 7.0e-19 97.8 167 38.9
MD01G1155300 Malus domestica HOM05D000157 ORTHO05D000311 7.0e-19 97.8 157 38.2
Lalb_Chr08g0231611 Lupinus albus HOM05D000086 ORTHO05D000311 1.6e-18 96.7 161 36.6
CiPaw.02G194000 Carya illinoinensis HOM05D000157 ORTHO05D000311 2.1e-18 96.3 163 36.2
FAN01G2645 Fragaria x ananassa HOM05D000157 ORTHO05D000311 2.1e-18 96.3 151 40.4
THA.LOC104823183 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 3.5e-18 95.5 159 39.0
Eucgr.L00233 Eucalyptus grandis HOM05D000157 ORTHO05D000311 4.6e-18 95.1 155 38.1
PSO017G0017 Papaver somniferum HOM05D000157 ORTHO05D000311 6.0e-18 94.7 173 33.5
BcaC05g29402 Brassica carinata HOM05D000086 ORTHO05D000311 1.3e-17 93.6 148 41.2
BolC5t34360H Brassica oleracea HOM05D000086 ORTHO05D000311 1.7e-17 93.2 158 39.2
SGA_v2.0_scaffold60G20979 Striga asiatica HOM05D000157 ORTHO05D000311 1.7e-17 93.2 93 59.1
FAN10G3483 Fragaria x ananassa HOM05D000157 ORTHO05D000311 2.3e-17 92.8 144 40.3
PSO170G0598 Papaver somniferum HOM05D000086 ORTHO05D000311 2.3e-17 92.8 163 33.7
THA.LOC104826846 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 2.3e-17 92.8 155 36.1
Lalb_Chr17g0346851 Lupinus albus HOM05D000086 ORTHO05D000311 3.0e-17 92.4 153 37.3
arahy.Tifrunner.gnm1.ann1.VN1U1F Arachis hypogaea HOM05D000157 ORTHO05D000311 3.9e-17 92.0 161 37.3
Aqoxy4G02455 Aquilegia oxysepala HOM05D000086 ORTHO05D000311 8.6e-17 90.9 148 33.8
CARHR085690 Cardamine hirsuta HOM05D000086 ORTHO05D000311 8.6e-17 90.9 154 38.3
LjContig00357g0025849 Lotus japonicus HOM05D000086 ORTHO05D000311 8.6e-17 90.9 159 36.5
Gohir.D10G251500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.1e-16 90.5 149 37.6
Gorai.011G292000 Gossypium raimondii HOM05D000157 ORTHO05D000311 1.1e-16 90.5 149 37.6
C05p56970 Brassica napus HOM05D000086 ORTHO05D000311 1.9e-16 89.7 158 38.6
Carub.0003s1042 Capsella rubella HOM05D000086 ORTHO05D000311 2.5e-16 89.4 163 39.3
Ca_05980_v3 Cicer arietinum L. HOM05D003447 ORTHO05D003967 2.5e-16 89.4 161 39.1
Prupe.2G252900 Prunus persica HOM05D000157 ORTHO05D000311 3.3e-16 89.0 160 38.8
Aa31LG3G4280 Aethionema arabicum HOM05D000086 ORTHO05D000311 4.3e-16 88.6 156 38.5
A05p38160 Brassica napus HOM05D000086 ORTHO05D000311 5.6e-16 88.2 158 38.0
BraA05t22609Z Brassica rapa HOM05D000086 ORTHO05D000311 5.6e-16 88.2 158 38.0
Thecc.09G352500 Theobroma cacao HOM05D000086 ORTHO05D000311 5.6e-16 88.2 147 35.4
AUR62022913 Chenopodium quinoa HOM05D000086 ORTHO05D000311 9.5e-16 87.4 137 42.3
Sp3g09430 Schrenkiella parvula HOM05D000086 ORTHO05D000311 2.1e-15 86.3 158 36.7
MD11G1068200 Malus domestica HOM05D000086 ORTHO05D000311 4.7e-15 85.1 160 35.6
PGSC0003DMG400027719 Solanum tuberosum HOM05D000086 ORTHO05D000311 4.7e-15 85.1 147 35.4
FvH4_7g24750 Fragaria vesca HOM05D000157 ORTHO05D000311 1.1e-14 84.0 148 38.5
DCAR_024816 Daucus carota HOM05D000157 ORTHO05D000311 1.8e-14 83.2 154 33.1
Psat2g032400 Pisum sativum HOM05D000086 ORTHO05D000311 1.8e-14 83.2 156 35.3
AL3G22650 Arabidopsis lyrata HOM05D000086 ORTHO05D000311 3.1e-14 82.4 161 35.4
Glyma.14G058000 Glycine max HOM05D000086 ORTHO05D000311 3.1e-14 82.4 155 36.1
MSTRG.8938 Avicennia marina HOM05D000086 ORTHO05D000311 5.2e-14 81.6 144 34.7
AT3G11110 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 6.8e-14 81.3 156 35.9
Thhalv10022203m.g Eutrema salsugineum HOM05D000086 ORTHO05D000311 8.9e-14 80.9 159 34.0
TWI79G0751 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 9.9e-13 77.4 152 34.2
C03p44690 Brassica napus HOM05D000086 ORTHO05D000311 2.9e-12 75.9 158 34.8
A03p36890 Brassica napus HOM05D000086 ORTHO05D000311 3.7e-12 75.5 161 32.9
HanXRQChr09g0251761 Helianthus annuus HOM05D000086 ORTHO05D000311 4.9e-12 75.1 155 33.5
BcaC01g04145 Brassica carinata HOM05D000086 ORTHO05D000311 8.3e-12 74.3 160 32.5
Prupe.6G053600 Prunus persica HOM05D000086 ORTHO05D000311 1.1e-11 73.9 157 31.2
Medtr5g082940 Medicago truncatula HOM05D000086 ORTHO05D000311 3.2e-11 72.4 154 33.1
FAN06G2507 Fragaria x ananassa HOM05D000157 ORTHO05D000311 9.2e-11 70.9 148 35.8
COL.COLO4_11090 Corchorus olitorius HOM05D000086 ORTHO05D000311 1.2e-10 70.5 156 32.1
Hma1.2p1_1981F.1_g309960 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 1.2e-10 70.5 159 30.8
Hma1.2p1_2504F.1_g323405 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 1.2e-10 70.5 159 30.8
Hma1.2p1_2504F.1_g323408 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 1.2e-10 70.5 159 30.8
HPP92_015578 Vanilla planifolia HOM05D000086 ORTHO05D000311 4.6e-10 68.6 143 32.2
Cpa.g.sc2.424 Carica papaya HOM05D000086 ORTHO05D000311 3.9e-09 65.5 173 29.5
MD03G1064400 Malus domestica HOM05D000086 ORTHO05D000311 3.9e-09 65.5 160 32.5
Oeu034918.1 Olea europaea HOM05D000086 ORTHO05D000311 1.1e-08 63.9 111 36.9
Ah.16g103690 Amaranthus hybridus HOM05D000086 ORTHO05D000311 1.9e-08 63.2 154 29.9
Rhsim04G0126300 Rhododendron simsii HOM05D000440 ORTHO05D000311 4.3e-08 62.0 133 36.1
Ah.10g036650 Amaranthus hybridus HOM05D000157 ORTHO05D000311 5.6e-08 61.6 153 29.4
Gohir.A03G028300 Gossypium hirsutum HOM05D000157 ORTHO05D000311 2.1e-07 59.7 115 36.5
Lalb_Chr04g0250481 Lupinus albus HOM05D000086 ORTHO05D000311 2.1e-07 59.7 154 32.5
Os01g0830900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 3.6e-07 58.9 166 27.1
Zm00001eb290050 Zea mays HOM05D000440 ORTHO05D000311 6.2e-07 58.2 146 29.5
Gohir.D03G140300 Gossypium hirsutum HOM05D000086 ORTHO05D000311 8.1e-07 57.8 113 35.4
Gorai.003G147100 Gossypium raimondii HOM05D000086 ORTHO05D000311 8.1e-07 57.8 113 35.4
Lsat_1_v5_gn_8_137820 Lactuca sativa HOM05D000157 ORTHO05D000311 1.8e-06 56.6 149 26.8
Os05g0468900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 1.8e-06 56.6 169 24.9
CSS0035204 Camellia sinensis var. sinensis HOM05D000440 ORTHO05D000311 8.9e-06 54.3 159 26.4


User provided reference genes

Program Settings