Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.3e-36 152.9 72 100.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.1e-17 92.8 56 83.9
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.1e-17 92.8 56 83.9
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.1e-17 92.8 56 83.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 5.7e-17 90.5 56 82.1
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 5.7e-17 90.5 56 82.1
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 5.7e-17 90.5 56 82.1
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 2.8e-16 88.2 56 80.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.8e-16 88.2 53 84.9
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.8e-16 87.4 56 80.4
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 4.8e-16 87.4 56 80.4
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 8.2e-16 86.7 132 43.9
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 8.2e-16 86.7 56 78.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 8.2e-16 86.7 54 83.3
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 8.2e-16 86.7 56 78.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.8e-15 85.5 56 80.4
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.4e-15 85.1 56 78.6
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.4e-15 85.1 56 78.6
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-15 85.1 56 76.8
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.3e-15 84.0 56 78.6
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-14 82.4 124 43.5
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-14 82.4 51 82.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.6e-14 81.6 56 76.8
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 3.4e-14 81.3 56 76.8
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 5.9e-14 80.5 56 76.8
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.9e-14 80.5 56 75.0
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.0e-13 79.7 56 76.8
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.0e-13 79.7 56 76.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-13 79.3 56 75.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-13 79.3 56 75.0
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.3e-13 79.3 56 75.0
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.7e-13 79.0 56 75.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.7e-13 79.0 56 75.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.7e-13 79.0 56 75.0
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.7e-13 79.0 56 75.0
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.2e-13 78.6 56 75.0
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.2e-13 78.6 56 75.0
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 2.2e-13 78.6 54 77.8
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.8e-13 77.8 61 68.9
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 3.8e-13 77.8 58 74.1
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 5.0e-13 77.4 56 75.0
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 5.0e-13 77.4 54 75.9
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 6.5e-13 77.0 54 75.9
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.1e-12 76.3 56 73.2
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.1e-12 76.3 56 73.2
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.4e-12 75.9 64 67.2
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.4e-12 75.9 56 73.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 9.4e-12 73.2 56 71.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 9.4e-12 73.2 56 71.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 9.4e-12 73.2 56 71.4
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 9.4e-12 73.2 56 71.4
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.1e-11 72.0 51 76.5
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-11 71.2 44 77.3
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 6.1e-11 70.5 44 81.8
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-11 70.5 52 69.2
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 6.1e-11 70.5 48 79.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 7.9e-11 70.1 57 70.2
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-10 69.7 41 85.4
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-10 68.9 56 67.9
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.9e-10 67.8 47 76.6
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-10 67.4 55 67.3
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.5e-09 65.1 56 66.1
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.7e-09 63.9 35 85.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 6.3e-08 60.5 35 82.9
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.2e-08 60.1 35 82.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.3e-07 57.4 35 80.0


User provided reference genes

Program Settings